Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0097.Seq
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    29   0.67 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.3  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   8.3  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 606 FLNSIKYV*ITQIITNCIEMLTFYIWLGYNCL 701
           F+ S+ Y+   Q+I +C E  T  IW G  CL
Sbjct: 217 FVYSLTYIHNQQLIASCGEDRTIRIWKGKECL 248


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 365 THSMLRTYDFQ*N**HSGTRPARVPRPHHPQPXKPDPERPYILNKTFRKSHSNISKRSNI 186
           +H  + TY  Q    HS T         H +P   + E    L+ T   SHS+   ++N+
Sbjct: 31  SHESVSTYQLQSQLSHSATSNLSTAANFHTRPPIANDENAQNLS-TVNSSHSSELSKANL 89

Query: 185 V 183
           V
Sbjct: 90  V 90


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 317  SGTRPARVPRPHHPQPXKP-DPERP 246
            SGTR   V +P HP P  P  P+ P
Sbjct: 941  SGTRVPPVQQPSHPNPYTPVAPQSP 965


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -3

Query: 419 RHPRNQQCQQAANRERS*THSMLRTYDFQ*N**HSGT--RPARVPRPHHPQPXKPDPERP 246
           RH  NQ  QQ +++ERS +++         +  H+ T  R   VPR     P       P
Sbjct: 149 RHQNNQHSQQYSSQERSSSYNNFEDASSPQSSYHTPTKRRKNAVPRKSSSPPLSSTKHAP 208

Query: 245 YIL-NKTFRKSHSNISKRSNIVP 180
                +  R+S S + K++N  P
Sbjct: 209 QSTERRPVRRSESRL-KQTNGEP 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,008
Number of Sequences: 5004
Number of extensions: 54810
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)