Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0097.Seq
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         31   0.95 
SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)          29   5.0  
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               29   5.0  
SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)              28   8.8  

>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 30  EIEMGSGGAGWSLAHRDRPQEISQLIKL*AEHILRESDR 146
           E ++G+G +G SLA    P+++   ++  AEH  RE+ R
Sbjct: 576 ETDLGTGNSGPSLAVLSNPRDLDVSLEFIAEHSRREAQR 614


>SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)
          Length = 330

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 320 HSGTRPARVPRPHHPQPXKPDPERPYILNKTFRKSHSNISKRSNI 186
           H  T P +  RP  P+   P P+ P    K  R   +  S +SN+
Sbjct: 3   HRPTSPRKESRPPSPRKTSPRPQSPKKEPKQTRSVETETSPQSNV 47


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 320 HSGTRPARVPRPHHPQPXKPDPERPYILNKTFRKSHSNISKRSNI 186
           H  T P +  RP  P+   P P+ P    K  R   +  S +SN+
Sbjct: 441 HRPTSPRKESRPPSPRKTSPRPQSPKKEPKQTRSVETETSPQSNV 485


>SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 587 ISSNEQIYLQ*NSLNIKHLNCVTKFQKHDD 498
           +S N +I+L  NSLN ++   + KF+KH +
Sbjct: 17  LSVNAEIFLASNSLNRRNAKSLGKFRKHSN 46


>SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)
          Length = 295

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 302 LDAYHCVISFTENHMYVTSSVFTSAHGWQPVDIV 403
           +D++    SFT  H + +   FTS+H   P D V
Sbjct: 244 IDSFTSGHSFTSGHSFTSGHSFTSSHSLTPSDDV 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,872,582
Number of Sequences: 59808
Number of extensions: 397847
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)