Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0097.Seq
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical...    30   1.9  
U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical
           protein F09C3.2 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 392 VDIVDCAGDARVLTDQQCANLKKKNDIPFIGNLLCGHRV 508
           + I  C  D+R  T  Q   + K N IPF+ +++CG+ V
Sbjct: 127 IKIAVCTADSRAATMDQ---MNKMNVIPFLDDIICGNDV 162


>AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical
           protein Y18D10A.12 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 320 HSGTRPARVPRPHHPQPXKPDPE 252
           H G RP   PRP  PQP +P PE
Sbjct: 44  HHG-RPPHSPRPPRPQPVQPRPE 65


>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 424 PSVTRAINNVNRLPTVSAREHTRCYVHM 341
           P     I+N+N + T+  +EHT C++++
Sbjct: 204 PKALPPIDNINLMRTLYTQEHTMCHINI 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,044
Number of Sequences: 27780
Number of extensions: 313117
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)