Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0092.Seq
         (711 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.                   31   4.1  
BC037344-1|AAH37344.1|  931|Homo sapiens RAG1 protein protein.         31   4.1  
AY011903-1|AAG38421.1|  258|Homo sapiens recombination activatin...    31   4.1  

>M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.
          Length = 1043

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 568 SAHETITLINASIILKRKSMSIQHFRVALFPFLRHFAFLF 687
           S HET+T I + +I +R++M      + L   LR F F+F
Sbjct: 666 SDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIF 705


>BC037344-1|AAH37344.1|  931|Homo sapiens RAG1 protein protein.
          Length = 931

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 568 SAHETITLINASIILKRKSMSIQHFRVALFPFLRHFAFLF 687
           S HET+T I + +I +R++M      + L   LR F F+F
Sbjct: 666 SDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIF 705


>AY011903-1|AAG38421.1|  258|Homo sapiens recombination activating
           protein 1 protein.
          Length = 258

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 568 SAHETITLINASIILKRKSMSIQHFRVALFPFLRHFAFLF 687
           S HET+T I + +I +R++M      + L   LR F F+F
Sbjct: 79  SDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIF 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,241,583
Number of Sequences: 237096
Number of extensions: 2064732
Number of successful extensions: 7394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7394
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)