Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0089.Seq
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.0  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   5.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   5.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.8  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   6.8  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   6.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.0  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 587 RGFGFVEFDDYDPVDR-VCLHKI 652
           R FGF+E DD   V+  VC++ +
Sbjct: 329 RTFGFLEIDDQGTVESFVCVNTL 351


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 305 GFWVFHYNYIYN 270
           GFW+FH +++++
Sbjct: 665 GFWLFHCHFLFH 676


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 85  QFNLLSLCFCSIKYSVSFLSLIT 17
           QFN +   FC   YS+S   + T
Sbjct: 545 QFNTIVFAFCYCYYSISIRPIST 567


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 88  FQFNLLSLCFC 56
           + FNL  LCFC
Sbjct: 317 YTFNLFYLCFC 327


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 88  FQFNLLSLCFC 56
           + FNL  LCFC
Sbjct: 273 YTFNLFYLCFC 283


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 4/12 (33%), Positives = 11/12 (91%)
 Frame = -3

Query: 305 GFWVFHYNYIYN 270
           G+W+FH +++++
Sbjct: 665 GYWLFHCHFLFH 676


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 379 LTKLTEELSSQNEQFQGKRL 438
           L  +T  L S+NE+F+ K L
Sbjct: 258 LNFITNNLKSENEEFKEKLL 277


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 379 LTKLTEELSSQNEQFQGKRL 438
           L  +T  L S+NE+F+ K L
Sbjct: 258 LNFITNNLKSENEEFKEKLL 277


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 339 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPE 449
           S++ +VD   +N P  ++ R + P  +  R  +  P+
Sbjct: 4   SRSFLVDSLISNTPKDMNARYLPPSLSDTRPMLPYPQ 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,867
Number of Sequences: 336
Number of extensions: 3004
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)