Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0089.Seq
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 78 1e-15
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 45 9e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 44 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 5e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 42 8e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 42 1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 1e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 7e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.004
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.005
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.005
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.005
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 34 0.016
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.021
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 32 0.085
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.11
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 31 0.15
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.15
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.20
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.34
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.45
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.79
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 1.0
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.0
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 28 1.4
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.4
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.4
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 3.2
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 3.2
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 5.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 5.6
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 5.6
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 5.6
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.4
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 25 7.4
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 9.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 78.2 bits (184), Expect = 1e-15
Identities = 37/90 (41%), Positives = 58/90 (64%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ EQ+GE++D VM+D T RS+GFGF+T+ V+E ++ H +DG+I++PKRA
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRA 237
Query: 420 VPREEIKRPEASATVKKLFVAGLKQDIEEE 509
+PREE ++ K+FV G+ D EE
Sbjct: 238 IPREEQEK------TAKMFVGGVPGDCTEE 261
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRA 419
+ Q+G ++D +M D T R +GFGF+TY V EA ++P+ I G+ VE KRA
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRA 322
Query: 420 VPREEIK 440
P+ ++
Sbjct: 323 TPKASLR 329
Score = 44.4 bits (100), Expect = 1e-05
Identities = 15/41 (36%), Positives = 29/41 (70%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
+ R +F+ FG ++ +++ DK+TG+ RGFGFV +++ V+
Sbjct: 262 EFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
LR+YF FG ++ +V+ D TG+ RGFGF+ F + V+ V
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKEF 252
K+FIGGL++ TTD SL+++
Sbjct: 164 KMFIGGLNWETTDDSLRDY 182
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 175 EEPEHTRKLFIGGLDYRTTDSSLKEF 252
EE E T K+F+GG+ T+ + F
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNF 266
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 45.2 bits (102), Expect = 9e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
DL FS FG I+S V+ DKETG + F+EFD+ + V++
Sbjct: 259 DLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
DL+E+F G I V ++T ++TGK +GFGFV+F D D
Sbjct: 243 DLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Score = 29.5 bits (63), Expect = 0.45
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 199 LFIGGLDYRTTDSSLKE 249
LF+G LD+ TTD+ LKE
Sbjct: 230 LFVGNLDFETTDADLKE 246
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 42.7 bits (96), Expect = 5e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
D+ FS FG V +++V DKETGK +GF F++++D
Sbjct: 46 DILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIV 404
+ ++GE VD+ +++D +T +SKGF F+ Y A +N + K+ R+V
Sbjct: 50 VFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 41.9 bits (94), Expect = 8e-05
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 416
+++I ++G + V +M++P TK S+GFGF+++S A +N + GR++ ++
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
Query: 417 A 419
A
Sbjct: 177 A 177
Score = 33.9 bits (74), Expect = 0.021
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+L++ FS FG + V ++ + T RGFGF+ F
Sbjct: 116 ELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
+LR+ F FG I V + DKETG+ +GF FV + D D
Sbjct: 217 ELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY 338
++ + ++G I V + KD +T R+KGF F++Y
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPREEIK 440
G I VV+ +P+T ++G+GF+T+S A + K+ GRI+ A PR K
Sbjct: 29 GPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPR---K 85
Query: 441 RPEASATVKKLFVAGLKQD 497
R E K ++QD
Sbjct: 86 RSEVDTDQNKAVKKTIRQD 104
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
DL +FS G I VVT+ ETG+ RG+GFV F + R
Sbjct: 20 DLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITY 338
Q+G + ++KDP T RS G GFI +
Sbjct: 299 QFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L + FS + ++V VV D+E GK RGFGFV F D D
Sbjct: 46 LYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSD 81
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPRE 431
E++G IV V+ D ++ RSKG+G++ + A N +IDGR+V + PR
Sbjct: 284 EEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
Query: 432 EIKRPEA 452
+P A
Sbjct: 344 ANPQPYA 350
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
DL F G+I S+ + TD ++G+ +GFG+V F D D
Sbjct: 381 DLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Score = 35.5 bits (78), Expect = 0.007
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L + F +G IV V+ D ++G+ +G+G+V+F+
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 428
G+I + + DP++ R KGFG++T+S + H I GR + PR
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
DL+ F FG + V + DK+T +GF +++F D D R L
Sbjct: 338 DLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYL 382
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLH 646
L + FS FG I+S V D E G +G+GFV FD + + H
Sbjct: 184 LHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
L+ FS FG I S ++TD E GK +GFGFV
Sbjct: 380 LKAEFSAFGTITSAKIMTD-EQGKSKGFGFV 409
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
++ + F FG I S+S+V D + K RGFGFV + +++
Sbjct: 275 QEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHE 312
Score = 30.7 bits (66), Expect = 0.20
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 416
+K +G I +M D + K SKGFGF+ Y+ ++A + + G+ +
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 417 AVPREEIKRPEASATVKKLFVAGLKQDI 500
A R+E++R + A ++ L+Q +
Sbjct: 439 A-QRKEVRRSQLEAQIQARNQFRLQQQV 465
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 261 WGE-IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 437
+GE + + ++ DP T+RS+GFG++ + A + A + GR V A PR
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPRRSF 173
Query: 438 KRPEAS 455
R E S
Sbjct: 174 AREERS 179
Score = 32.7 bits (71), Expect = 0.049
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
DL ++F + S+ +V D T + RGFG+VEF+ D
Sbjct: 109 DLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.9 bits (79), Expect = 0.005
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+L+ +F++ G++ V+++ DK TG +GF ++EF +
Sbjct: 70 ELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.9 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
+ +R YFS FG ++ + + +++TG + + F+EF+ D
Sbjct: 119 KQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L+ +F G + SV + TDK +G+++G+ FVEF
Sbjct: 108 LQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+ + E F+ G + + +V D ETG +G+GF EF D
Sbjct: 21 QQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
L YF G+I V +V D +T +GF +++F D VD+ L
Sbjct: 286 LWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Score = 32.7 bits (71), Expect = 0.049
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRA 419
G I V +++DPKT KGF +I + VD+A K+ +GR + RA
Sbjct: 294 GSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 31.9 bits (69), Expect = 0.085
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 521 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+ S + + S ++TD +T RG+GFV F D
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 285 VMKDPKTKRSKGFGFITYS 341
+M DP+T S+G+GF+ ++
Sbjct: 218 IMTDPQTNVSRGYGFVRFT 236
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+ F G + S +V D E+G+ +G+GF E+ D
Sbjct: 23 DIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 374
I +Q G + ++ DP++ + KG+GF Y A N
Sbjct: 24 IFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY 338
+K I E +G+I V + +D + RSKGFG+I Y
Sbjct: 356 VKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+ L E FS FG I S ++ + T +G+GFV F
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ + ++G I + P T+ SKG+GF+++S +A N ++G + KR
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINT----LNGVLFGKKRL 492
Query: 420 VPREEIKRPEASATVKKLF 476
KR + + +F
Sbjct: 493 FVNYAEKREDRKKRLSAIF 511
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+ L + FS FG+I+S + +G +G+GFV F
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 416
++ + +G I+ ++ P + SKG+GF+ + Q A++ ++G +V KR
Sbjct: 400 LEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDT----LNGMMVGKKR 454
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.34
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
R+L + F+ G+++ + + TG+ +GFG V+F++
Sbjct: 294 RNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFEN 329
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 521 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKIT 655
Y + FG + S + D ET +G+GF F++ + +C+ +T
Sbjct: 315 YTNRFGKVSSSKAIIDMETNLCKGYGFACFEE-EKSALICISAMT 358
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.79
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQNNR 377
G++V + + RSKG+GF++Y D EA NN+
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/73 (17%), Positives = 35/73 (47%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ +G++ V + K + + KGFG++ + + A + ++ R++ +
Sbjct: 773 VETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLS 830
Query: 420 VPREEIKRPEASA 458
PRE +++ S+
Sbjct: 831 KPRESLEKTRVSS 843
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
F FG I+SV++ KE R + FVEFD+
Sbjct: 26 FIPFGEIISVALHR-KEKAVDRSYAFVEFDE 55
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 416
+K +QWG ++ V V+KD + + F+ + +A + + I DGR + +R
Sbjct: 99 VKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIER 155
Query: 417 AVPREEIK 440
A I+
Sbjct: 156 AKVNRTIR 163
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
++T + +V+++ +KET K R F F +F
Sbjct: 92 YATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 193 VCVQVLHSHRRFPKASYLIFTRLKS*DVNNQLRIGFQFNLLSLCFCSIKYSVSFLSL 23
V +VL SH S + + LKS + NN + GF S+ + ++V F S+
Sbjct: 736 VLARVLVSHEVSRLTSEALLSELKSRNGNNSVEEGFSEEERSILLKLLSWNVKFCSI 792
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 12/48 (25%)
Frame = +2
Query: 545 VSVSVVTDKETGKKR---------GFGFV---EFDDYDPVDRVCLHKI 652
++ +V TDKETG++R G V EFD +DRV +H++
Sbjct: 389 LTAAVTTDKETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEV 436
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+R L F ++G ++ V ++T + RG FV FD+ + R
Sbjct: 43 KRILEHLFGSYGKVIDVQA---RKTLRMRGQAFVVFDNLENASR 83
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 339 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLK 491
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
E FG+++S ++ + G +GF F EF
Sbjct: 328 ELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 151 PSESGDDYEEPEHTRKLFI 207
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 297 PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 470
P+T+ S+ F F+ Y + ++A +++ GR +E V R E K+P S K
Sbjct: 41 PRTRTSRPFAFVEYEDSRDAEDAY----YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 473 QLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGLRICNK 327
QL SF +F +F + L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.4
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +3
Query: 246 RILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH------KIDGRIVE 407
R LE E + +++ + F F++ +++ +D ++ + K GRIV
Sbjct: 5 RFLENGREQIRNLLLNASTVSSAPSFSFVSGNESADLDSCASSIVYAYCLQRKQLGRIVV 64
Query: 408 PKRAVPREEIK-RPEAS 455
P +PR+E++ RPE S
Sbjct: 65 PFFNIPRKELRLRPELS 81
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 157 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE 249
+ GD + R LF YRT DSS+K+
Sbjct: 353 QQGDSFPSLPEIRALFKDCKFYRTIDSSIKD 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,448
Number of Sequences: 5004
Number of extensions: 51068
Number of successful extensions: 222
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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