Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0089.Seq
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 87 9e-18
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 56 3e-08
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 48 7e-06
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 45 6e-05
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 45 6e-05
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 44 8e-05
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 43 2e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.001
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.002
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 39 0.003
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 39 0.003
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.003
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 39 0.004
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 38 0.006
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.006
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 38 0.010
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.010
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 38 0.010
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 37 0.013
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 37 0.017
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 37 0.017
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 36 0.022
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.068
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.090
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 34 0.12
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 33 0.21
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 32 0.48
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 32 0.48
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.48
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 31 0.84
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 2.6
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 29 3.4
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 5.9
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 28 7.8
SB_44083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 7.8
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 87.4 bits (207), Expect = 9e-18
Identities = 41/90 (45%), Positives = 56/90 (62%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K QWG IVD V+MK + RS+GFGF+TY + V+E + H +D R +EPKR+
Sbjct: 66 LKDYFSQWGTIVDCVIMK--RDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRS 123
Query: 420 VPREEIKRPEASATVKKLFVAGLKQDIEEE 509
VPR+E PEA + +K+FV GL EE
Sbjct: 124 VPRDESGAPEAMSKTRKIFVGGLASTTVEE 153
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
L++YFS +G IV ++ K G+ RGFGFV ++ D V+ V K
Sbjct: 66 LKDYFSQWGTIVDCVIM--KRDGRSRGFGFVTYESSDSVNEVLKKK 109
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Frame = +2
Query: 509 DLREYFSTF------GNIVSVSVVTDKETGKK-RGFGFVEFDDYDPVDRVCLHKITKLK 664
D++EYF++ G ++ V + D++ K+ RGF FV FD+ + V++VC K +++
Sbjct: 154 DIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIR 212
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 264 GEIVDVVVMKD-PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 440
GE++DV + +D KR +GF F+T+ +V++ + H+I + E K+A P+ ++
Sbjct: 169 GEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEPQSAMR 228
Query: 441 RPE 449
+ +
Sbjct: 229 KKD 231
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 178 EPEHTRKLFIGGLDYRTTDSSLKEF 252
E E RK+FIGGL++ TT+ LK++
Sbjct: 45 ESEKLRKIFIGGLNWNTTEEGLKDY 69
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 151 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEF 252
P + E TRK+F+GGL T + +KE+
Sbjct: 125 PRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEY 158
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEAQNNRPHKIDGRIVE 407
++ E +GE+ DVVV+ D TK+S+GFG++T++ +++ + N H+IDG+ VE
Sbjct: 30 LREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVE 89
Query: 408 PKRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 509
KRA+PR++ T KK+FV GL +D +E
Sbjct: 90 VKRAIPRDDNSATSHEKT-KKIFVGGLPEDATKE 122
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKI 652
LREYF +G + V V+ D T K RGFG+V F DY V K+
Sbjct: 30 LREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKV 76
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
I+ +LE+ + VD+++ K+ +TK +GF F+ + DE + + G++VE K+A
Sbjct: 128 IESLLEEKVDKVDLIMKKEDETKH-RGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKA 186
Query: 420 VPRE 431
PR+
Sbjct: 187 TPRD 190
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 557 VVTDKETGKKRGFGFVEFDDYDPVDRVCLHKITKLK 664
++ ++ K RGF FVE ++ D D +C K +K
Sbjct: 142 IMKKEDETKHRGFAFVELNNEDQADELCCVKKIHVK 177
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKEF 252
KLF+GGL+ TT+ +L+E+
Sbjct: 15 KLFVGGLNRETTNETLREY 33
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 56.0 bits (129), Expect = 3e-08
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+++ E++GE+ + VVM+DP TKRS+GFGF+T+ VD N+ ++DG K+
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDG-----KKM 178
Query: 420 VPREEIKRPEASATVKKLFVAGLKQDIEEE 509
V T KK+F+ GL + EE
Sbjct: 179 V-----------TTTKKIFIGGLSTNTSEE 197
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
LR++F FG + V+ D T + RGFGF+ F D VD V
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVV 165
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDGRIVEPK 413
+K ++GEI V DP T+RS+GFGF+ + + ++A+N + H+I GR+ E +
Sbjct: 131 MKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKD---EDAKNVLSTSHRIQGRLCEVR 187
Query: 414 RAVPREEIKRPEASATVKKLFVAGLKQDIEEET 512
P+EE+ P KKLFV L + E+T
Sbjct: 188 LPRPKEELNVP------KKLFVGRLPESTTEKT 214
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+++EYF+ FG I V D T + RGFGFV F
Sbjct: 130 EMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRF 163
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
+++ Q+GEI + VV+KD TK+SKG+GF+T + + + A N+ I+GR
Sbjct: 26 LRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGR 78
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LR++F+ FG I V+ D+ T K +G+GFV D + C +K
Sbjct: 26 LRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 267 EIVDVVVMKDPKTKRSKGFGFITYSQ-AHMVDEAQNN-RPHKIDGRIVEPKRAVPREEIK 440
++ V + K P+ K S+ F F+ +S + ++D N H ID + VE KRA+PR++
Sbjct: 38 DVSSVSLAKTPEGK-SRKFCFVEFSNGSDIIDNIVFNFESHSIDNKQVEVKRAMPRDD-P 95
Query: 441 RPEASATVKKLFVAGLKQDIEEE 509
A KKLF+ GLK + EE
Sbjct: 96 NELAHVRTKKLFIGGLKDEHSEE 118
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +3
Query: 273 VDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+++ +++D +T + KG+ F+ + H+VD+ R ++ G+ VE K+A
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 545 VSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKITKLK 664
+ + +V D+ET K +G+ FV F + VD++ L + ++K
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVK 172
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 300 KTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATV 464
+ + KGFGF+T+ ++ +PH +DG+ ++PK AVPR ++ + A +
Sbjct: 137 RARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVM 191
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKEF 252
K+FIGGL + TT+ LKE+
Sbjct: 203 KVFIGGLAFGTTEEDLKEY 221
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +3
Query: 282 VVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 431
++M D T+R +GFGF+T+ + D+A + + H I+ + VE K+A P+E
Sbjct: 1 MLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPKE 50
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 566 DKETGKKRGFGFVEFDDYDPVDRVC 640
DK T + RGFGFV F+ + D+ C
Sbjct: 5 DKATQRHRGFGFVTFESENSADKAC 29
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+ L+EYFS +G +V V + D TG+ RGF FV+F D +
Sbjct: 42 KESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAI 86
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 512 LREYFS-TFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
+REYF + + + +T+ + ++RGF FV FD D VD++C
Sbjct: 119 IREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKIC 162
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K ++GE+V V + D T R +GF F+ + H+ + ++PK A
Sbjct: 45 LKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFK-------------HQSEADAIDPKPA 91
Query: 420 VPREEIKRPEASATVKKLFVAGLKQDIEEE 509
P I +P VKK+FV GLK + +E
Sbjct: 92 AP---IGKP-PHLRVKKIFVGGLKPETSDE 117
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 431
+ + ++ + + + R +GF F+++ VD+ + H I+G VE KRA+P+E
Sbjct: 127 YAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPKE 183
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKEF 252
KLF+GGL Y TT SLKE+
Sbjct: 30 KLFVGGLSYETTKESLKEY 48
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
LRE F+T GN+ SV ++ D++TG +GFG+V F+ D V
Sbjct: 72 LRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAV 110
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE--PK 413
++ + G + V +++D KT KGFG++ + V A + GR + P
Sbjct: 72 LRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPS 131
Query: 414 RAVPREE 434
+ P+ E
Sbjct: 132 KDKPQTE 138
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 416
+K I + G+IV + VM DP+ K SKGFGF+++ +EA N K I GR + R
Sbjct: 125 MKEICAEAGKIVSLKVMTDPEGK-SKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGR 183
Query: 417 AVPREEIKRPEASATVKK 470
A R E + E A ++K
Sbjct: 184 AKKRAE-RAAEVKAEIEK 200
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
++E + G IVS+ V+TD E GK +GFGFV F+
Sbjct: 125 MKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFE 157
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
LRE FS +G I S V+ D + G +GFGFV F
Sbjct: 228 LREEFSPYGTISSAKVMKD-DKGNSKGFGFVCF 259
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 413
+G I VMKD K SKGFGF+ +S +A +++GRI+ K
Sbjct: 235 YGTISSAKVMKDDKGN-SKGFGFVCFSSPEEATKAVT----EMNGRILISK 280
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L+E FS G ++S +V D+ETGK +G+GF E+ D +
Sbjct: 41 LKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQE 77
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +2
Query: 542 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++SV V+TD+ETG+ RGFGFV F D +D+
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDK 65
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 267 EIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 434
++VDV V+ D +T+R +GF F+T+ S+ +M D + DGR ++ +A RE+
Sbjct: 254 DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQ 310
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 270 IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPREE 434
++ V V+ D +T R +GFGF+T+ +D+A + +DGR ++ +A PR E
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGE 90
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
DL++ FS + ++V V V++D+ET + RGF FV F
Sbjct: 245 DLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTF 277
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 41.5 bits (93), Expect = 6e-04
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+ D+++ F T GN+ S ++ D+ TG+ G+ FV +D+ D ++
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANK 83
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
++ F FG I++ V+ D +G+ RG GFV FD
Sbjct: 128 EVEALFKPFGKIITSKVLKDV-SGEGRGTGFVRFD 161
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +2
Query: 539 NIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++V V V+TD+ETG+ RGFGFV F + +++
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEK 60
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 267 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPREE 434
++VDV V+ D +T R +GFGF+T+ +++A + DGR ++ +A PR E
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGE 85
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
RDL E+FS G + V +++D+ + + +G ++EF D V
Sbjct: 160 RDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAV 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++ F FG + SV ++ D ET + +G+GFV+F + + R
Sbjct: 258 VKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKR 298
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
+K + E +G + V ++ D +T RSKG+GF+ + +A A
Sbjct: 258 VKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/66 (39%), Positives = 33/66 (50%)
Frame = +2
Query: 413 TSSSKGRD*KTRS*CHR*KVVCSWTEARH*RRDLREYFSTFGNIVSVSVVTDKETGKKRG 592
TSS+ GR R +VCS RH D+R F +G I V VV DK T + RG
Sbjct: 9 TSSNSGRIDVDNPPFSRVFIVCS---KRHNAEDIRSAFEQYGTIEDVWVVKDKATKENRG 65
Query: 593 FGFVEF 610
+V+F
Sbjct: 66 VCYVKF 71
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 347
I+ EQ+G I DV V+KD TK ++G ++ + +A
Sbjct: 39 IRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKA 74
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 539 NIVSVSVVTDKETGKKRGFGFVEFD 613
N+V V V+TD+ETG+ RGFGFV +
Sbjct: 106 NVVDVRVITDRETGRPRGFGFVTLE 130
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 270 IVDVVVMKDPKTKRSKGFGFIT 335
+VDV V+ D +T R +GFGF+T
Sbjct: 107 VVDVRVITDRETGRPRGFGFVT 128
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
D+ YF +G + V ++TD+ETGK +G G V+ V+++
Sbjct: 334 DVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKI 376
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
L++YF FG + SV ++ G R +GFV F D P V
Sbjct: 96 LKDYFEQFGEVESVRIMR-TFLGYSRNYGFVLFKDDGPSKEV 136
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
DL + F FG ++S V DK+T + FGFV +D+
Sbjct: 292 DLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 327
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
DL FS FG I+S V+ D++TG+ + F+EF+ + +R
Sbjct: 135 DLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCER 176
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
D++ F FG +V S+ + TGK +G+GF+E+++
Sbjct: 214 DIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYEN 249
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
IK + E +G++V + K+P T + KG+GFI Y ++A
Sbjct: 215 IKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDA 256
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
+R F FG I + + D K +GF FVE+D
Sbjct: 118 IRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYD 151
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 527 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+ F + V+ D+E+G+ RGFGFV++DD + +V
Sbjct: 307 AAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKV 343
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 285 VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREE 434
V+ D ++ S+GFGF+ Y + + ++DGR V A PR E
Sbjct: 317 VIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFASPRTE 367
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
DLR F +FG+I V +V D +T + +G+G+V+F
Sbjct: 68 DLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKF 101
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 413
E +G+I V +++D KT+ +KG+G++ + ++ A N + EPK
Sbjct: 74 ESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCDKSLKAVWAEPK 126
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L F FG+I V + D T K RGFGFVEF+
Sbjct: 21 LHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFE 54
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVP 425
+G+I DV + D T + +GFGF+ + A A N ++ GR + A P
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = +2
Query: 548 SVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+V+++TD+ETG+ RGFGFV F + +++
Sbjct: 124 AVNIITDRETGRPRGFGFVTFGSKEEMEK 152
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 279 VVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 428
V ++ D +T R +GFGF+T+ +++A + +DGR ++ A PR
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPR 175
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR--IVEPK 413
++ + +G I D+ +++ +T +SKGFG++TY A A H IDG+ I EPK
Sbjct: 79 LESVFGPYGAIEDLSIIRT-QTGKSKGFGYVTYENAESAQRALAG-THIIDGKWVIAEPK 136
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+ L F +G I +S++ +TGK +GFG+V +++ + R
Sbjct: 76 KSSLESVFGPYGAIEDLSIIRT-QTGKSKGFGYVTYENAESAQR 118
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
+ R+ F +GNIV+ ++ DK TG +G GFV +D
Sbjct: 148 EFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYD 182
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 288 MKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
+KD K+ RSK +GF+ + ++A N+PH I+G+ P V
Sbjct: 94 VKDLKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQKSGPSSPV 138
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEP 410
+ E+ G I D +M DP + +KGF F T+S DEAQ N K+D + + P
Sbjct: 171 VFEECGHIYDFRLMIDPISGLTKGFAFCTFSNK---DEAQ-NAVKKLDNKEIRP 220
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/28 (50%), Positives = 24/28 (85%)
Frame = +2
Query: 533 FGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+G IV+V++V DK+TGK++GF F+ ++D
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYED 29
Score = 34.7 bits (76), Expect = 0.068
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIV 404
+GEIV+V +++D KT + KGF F+ Y Q + N K+ GR +
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTI 50
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLH 646
++E FS +G + +V + TD+ RGF +VE+ D + ++ H
Sbjct: 1173 VQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKH 1217
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/28 (50%), Positives = 24/28 (85%)
Frame = +2
Query: 533 FGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+G IV+V++V DK+TGK++GF F+ ++D
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYED 29
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 374
+GEIV+V +++D KT + KGF F+ Y A +N
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDN 39
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L + F FG ++S V DK+T + FGFV +D+
Sbjct: 278 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 312
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFG 598
DL + F FG ++S V DK+T + FG
Sbjct: 244 DLMQTFQPFGTVISAKVFIDKQTNMSKCFG 273
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
L++ FS FG ++ VS+ K G+ +GF F+EF+ + V
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHV 145
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
++ + F FG + V ++ DKE+G+ RGFGFV D +
Sbjct: 24 EIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQI 62
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
I++ E++G + V +++D ++ RS+GFGF+ A + A + + GR +
Sbjct: 25 IEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVAL 83
Query: 417 AVPREE 434
A+ + E
Sbjct: 84 ALDKTE 89
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 527 STFGNIVSVSVVTDKETGKKRGFGFVEF 610
S G + +V + TDK TG++R FGFVEF
Sbjct: 478 SNAGPLENVRIPTDKNTGQQRSFGFVEF 505
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 512 LREYFSTFGNIVSV-SVVTDKETGKKRGFGFVEFDDYDPVD 631
L + FS FG I+ ++ D +TG +GF F+ F +D D
Sbjct: 116 LYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASD 156
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
E F G +V+V + D+ T +G+GFVEF
Sbjct: 31 ELFLQSGPVVNVHMPKDRITQLHQGYGFVEF 61
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-------DDYDPVDRVCL 643
DL++ F +G++ + + D+ T + RGF FV F D D +D CL
Sbjct: 31 DLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCL 82
Score = 34.3 bits (75), Expect = 0.090
Identities = 10/44 (22%), Positives = 28/44 (63%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 371
+K++ +++G++ D+ + +D T S+GF F+ + + ++A +
Sbjct: 32 LKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMD 75
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
DL +G I+S + DK+T +G+GFV+F+
Sbjct: 115 DLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFE 149
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L F+ + + + +V DK++ K +G+GFV F D
Sbjct: 233 LTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKD 267
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY 338
+ R ++ + +++D K+ +SKG+GF+++
Sbjct: 233 LTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSF 265
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ E++G + + +++D K SKG+ FIT+ + D ++N+ +++ +A
Sbjct: 24 LRAFFEEYGVVKESKIVRD-KHGVSKGYAFITFESQEVADGLRDNKGLDFKDKVLSIGQA 82
Query: 420 VPRE 431
V R+
Sbjct: 83 VRRK 86
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
++ E FS G + V +VT++ GK +G+G+VE++
Sbjct: 186 EIEELFSKHGVVKQVRLVTNR-AGKPKGYGYVEYE 219
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 228 HRFF---IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYS 341
H FF IK+ EQ+G + + + + K+ RSKG+ F+ ++
Sbjct: 107 HGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFA 147
Score = 31.1 bits (67), Expect = 0.84
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+++++F FG + + + K++ + +G+ FVEF
Sbjct: 113 EIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEF 146
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDK--ETGKKRGFGFVEF 610
L+E FS FG + SV K +K GFGFV+F
Sbjct: 263 LKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQF 297
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 416
I + +Q+G+I V+ D T+ SKG F+ Y A V + +G ++ R
Sbjct: 432 ITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAATDEDSEGLFLDGNR 490
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
RDL ++ +G + +S+ K G+GFVEFDDY D
Sbjct: 19 RDLEKFVRGYGRVREISM--------KLGYGFVEFDDYRDAD 52
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 407
IK + Q G + V +P S+GF F+ Y+ A ++ Q R H +GR VE
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQ--RAH--NGRQVE 273
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+ S +GNI + +V + TG +G+GFVE+
Sbjct: 131 DLMSPYGNIERLFLVRSEVTGDSKGYGFVEY 161
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
++E FS GN+ V + G RGF FV++
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDY 254
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 395
GEI V + ++ KTK KG +T++ E R H I G
Sbjct: 145 GEIASVYIPENLKTKERKGHCIVTFASVTEAFEVVKKRKHHIHG 188
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
EYFST G V +GK +GF FV + V+ V
Sbjct: 60 EYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAVESV 99
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDGRIVEPK 413
+K +L +GE+ ++KD T SKG+ F Y + D A N D +++ +
Sbjct: 689 VKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKKLIVQR 748
Query: 414 RAV-PREEIKRPEASATV-KKLFVAGL 488
+V ++ + P+A V +L + GL
Sbjct: 749 ASVGAKQNLNNPQAMNMVPAQLQIPGL 775
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 344
+LE+ GEI + + DP T +KGF F T+++
Sbjct: 172 LLEKCGEIREFRLQMDPATGLNKGFAFCTFTE 203
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +3
Query: 270 IVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDE--AQNNRPHKIDGRIVEPKRAVPREE 434
I D+ ++KD T S+GF F+ T +A + E A N P IDGR++ A E
Sbjct: 436 IYDIRLIKDKVTGTSRGFCFVELATIEEATQLLELIAAMNPPFMIDGRVITTLYARKSEP 495
Query: 435 IKRPEASAT 461
P +T
Sbjct: 496 SPVPTTKST 504
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 276 DVVVMKDPKTKRSKGFGFITY 338
+V V+KDP +SKGFGF+++
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSF 561
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRG 592
+L +FS FG + V +V D+ TG +G
Sbjct: 1081 ELETFFSNFGPVADVRIVCDRRTGLNKG 1108
>SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 173 MKNLNTHVNFLSVDSTIEPQILH*KNSRAMGRNCRCSCNERPKNQEIKR 319
+K LNTH + + + P+ L K+ + ++ R E P NQ++ R
Sbjct: 62 LKRLNTHARYKREEPWLAPKNLSIKSVESRHQSVRTCLTELPTNQKMSR 110
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L E F+ FG + V ++ D E+GK R GFV F
Sbjct: 540 LLELFNKFGPVKDVVILRD-ESGKSRQSGFVHF 571
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 569 KETGKKRGFGFVEFDDY-DPVDRV 637
++ KRG+GFVEFDD+ D D V
Sbjct: 716 RDISLKRGYGFVEFDDHRDAEDAV 739
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 551 VSVVTDKETGKKRGFGFVEF-DDYDPVD 631
V VV D+ET + R FG+V F D+ D D
Sbjct: 5 VIVVYDRETRRSRNFGYVTFRDEQDAAD 32
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +3
Query: 276 DVVVMKDPKTKRSKGFGFITY 338
+V+V+ D +T+RS+ FG++T+
Sbjct: 4 EVIVVYDRETRRSRNFGYVTF 24
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Frame = +3
Query: 270 IVDVVVMKDPKTK-------RSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVP 425
+ DV+++K+P+ + RS+GFGF+T++ A + K + GR ++ ++
Sbjct: 77 VTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPSIS 136
Query: 426 R 428
R
Sbjct: 137 R 137
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 662 LIW*FCASILCQLDHNHQTLQNQSPFSFLFLYL 564
L+W AS LC ++ L+N S FS++ +L
Sbjct: 214 LVWNVPASFLCWYRPAYKALKNDSSFSYIIFFL 246
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 294 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRAVPREEIK 440
+P R +GFGF+T++ A ++A+ I DGR VE + + I+
Sbjct: 117 NPLNLRIEGFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQSYIR 166
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKR 589
+DLR F +G I ++++ DK TG+ +
Sbjct: 184 KDLRPIFEPYGQIYELTILKDKYTGQHK 211
>SB_44083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 390 DGRIVEPKRAVPREEIKRPEASATV 464
D R VEP ++P E+KR A +V
Sbjct: 99 DNRAVEPPESIPNSEVKRSIADGSV 123
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 154 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE 249
S +D +P TR LF+G ++ TT LKE
Sbjct: 236 SNYSEDEFDPGCTRTLFVGNIEKTTTYGDLKE 267
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGF 601
EY S G+ S++ DKETG GF
Sbjct: 45 EYLSVHGDKADASIIHDKETGITTKIGF 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,149,807
Number of Sequences: 59808
Number of extensions: 337382
Number of successful extensions: 1137
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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