Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0089.Seq
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 588 LFFPVSLSVTTLTETIFPNVL 526
           +F PVS   TT+   I+P V+
Sbjct: 829 MFLPVSYMSTTMAGVIYPPVI 849


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 620 HNHQTLQNQSPFSFLFLYLSQH*QKQY 540
           H+HQ L  QSP+    +Y +   +K+Y
Sbjct: 77  HHHQVLYQQSPY---LMYENPDEEKRY 100


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 225 NHRFFIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 389
           N R  ++  LE+    + V+V   P+T R    G +T ++  +    +  R H +
Sbjct: 59  NRRAHLRNCLEK----LKVLVPLGPETSRHTTLGLLTKAKRFIKSLEERERKHAV 109


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 488 EARH*RRDLREYFSTFGNIVSVSVVTDKETGKKR 589
           E RH RR+L  +      +V +  V ++  G++R
Sbjct: 12  ERRHIRRELLRWTKNMVFVVGLERVAEELMGRRR 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,918
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)