Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0089.Seq
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 67 1e-11
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 66 1e-11
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 66 1e-11
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 66 1e-11
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 65 3e-11
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 65 3e-11
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 64 6e-11
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 63 2e-10
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 63 2e-10
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 63 2e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 62 2e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 60 1e-09
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 57 1e-08
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 55 5e-08
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 54 6e-08
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 52 5e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 51 8e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 2e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 2e-06
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 49 2e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 49 2e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 49 2e-06
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 47 1e-05
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 47 1e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 46 2e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 46 3e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 46 3e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 3e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 3e-05
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 45 4e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 45 5e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 45 5e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 44 9e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 44 9e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 43 2e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 2e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 43 2e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 3e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 42 3e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 41 8e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 41 8e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 41 8e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 0.001
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 40 0.001
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 40 0.001
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 40 0.002
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 40 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 40 0.002
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.003
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.003
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 39 0.003
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 39 0.003
At5g51300.2 68418.m06360 splicing factor-related contains simila... 39 0.003
At5g51300.1 68418.m06359 splicing factor-related contains simila... 39 0.003
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 39 0.003
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.003
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 39 0.003
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 39 0.003
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 39 0.003
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.005
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.005
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 38 0.005
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 38 0.006
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 38 0.006
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.008
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.008
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 38 0.008
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 38 0.008
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.008
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 37 0.010
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 37 0.010
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 37 0.010
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 37 0.010
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 37 0.010
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 37 0.010
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 37 0.010
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 37 0.014
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 37 0.014
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.018
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 36 0.018
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.018
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 36 0.024
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 36 0.024
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 36 0.024
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.024
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.024
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.024
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 36 0.024
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 36 0.032
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.032
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.032
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.042
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 35 0.042
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 35 0.042
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.042
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.042
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.042
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.042
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.042
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 35 0.056
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 35 0.056
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 35 0.056
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 35 0.056
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 34 0.073
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 34 0.073
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.097
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 34 0.097
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 33 0.13
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 33 0.13
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.17
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 33 0.17
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.22
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 33 0.22
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 33 0.22
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.22
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.22
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.30
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 32 0.30
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 32 0.30
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 32 0.30
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 32 0.30
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.30
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 32 0.30
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 32 0.30
At4g38440.1 68417.m05432 expressed protein 31 0.52
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 31 0.52
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 0.52
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 31 0.68
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 30 1.2
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 1.2
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 1.2
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 1.6
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 1.6
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 1.6
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 2.1
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.1
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 29 2.1
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 29 2.1
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 29 2.8
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 2.8
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 2.8
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 29 2.8
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 2.8
At1g41855.1 68414.m04833 hypothetical protein 29 2.8
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.8
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.8
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.8
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 29 3.6
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 3.6
At4g30150.1 68417.m04287 expressed protein 28 4.8
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 28 4.8
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 28 6.4
At5g20370.1 68418.m02423 serine-rich protein-related contains so... 28 6.4
At3g25160.1 68416.m03141 ER lumen protein retaining receptor fam... 28 6.4
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 8.4
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 8.4
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 27 8.4
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 27 8.4
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREE 434
++GEI D V+MKD KT + +GFGF+TY+ + +VD+ Q+N H I G+ VE KR +PR
Sbjct: 64 KYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKRTIPRGS 121
Query: 435 IKRPEASATVKKLFVAGLKQDIEEE 509
+ + KK+FV G+ ++++
Sbjct: 122 MSSNDFK--TKKIFVGGIPSSVDDD 144
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPKR 416
K Q+GE+ + +M+D T RS+GFGF+TY MVD A+ NR ++ G VE K+
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR-IELSGTQVEIKK 205
Query: 417 AVPREEIKRPEASATVKKLF 476
A P K+P + T K F
Sbjct: 206 AEP----KKPNSVTTPSKRF 221
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+ +E+F FG + ++ D TG+ RGFGFV ++ D VD +
Sbjct: 145 EFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHL 187
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
++F +G I ++ D++TG+ RGFGFV + D VD+V
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K +Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 423 PRE 431
P+E
Sbjct: 187 PKE 189
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 420 VPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEE 509
VPR++ +KR + KK+FV GL I EE
Sbjct: 81 VPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
+ + YF FG I V V+ D T + RGFGF+ FD D VDRV LHK
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV-LHK 170
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + K
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K +Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 423 PRE 431
P+E
Sbjct: 187 PKE 189
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 420 VPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEE 509
VPR++ +KR + KK+FV GL I EE
Sbjct: 81 VPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
+ + YF FG I V V+ D T + RGFGF+ FD D VDRV LHK
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV-LHK 170
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + K
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K +Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 423 PRE 431
P+E
Sbjct: 187 PKE 189
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 420 VPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEE 509
VPR++ +KR + KK+FV GL I EE
Sbjct: 81 VPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
+ + YF FG I V V+ D T + RGFGF+ FD D VDRV LHK
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV-LHK 170
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + K
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K +Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 139 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAV 198
Query: 423 PRE 431
P+E
Sbjct: 199 PKE 201
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/59 (40%), Positives = 42/59 (71%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 434
++G++V+ V+M+D T R++GFGFI ++ + + ++ H IDGR VE K+AVPR++
Sbjct: 37 KYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK-HIIDGRTVEAKKAVPRDD 94
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
L+EYF +G++V ++ D+ TG+ RGFGF+ F D +RV + K
Sbjct: 31 LQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
+ + YF FG I V V+ D T + RGFGF+ FD + VD V LHK
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV-LHK 182
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 65.3 bits (152), Expect = 3e-11
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE KRAV
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAV 184
Query: 423 PREEIKRPEAS 455
P+E P S
Sbjct: 185 PKELSPGPSRS 195
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 420 VPREE---IKRPEASA---------TVKKLFVAGLKQDIEE 506
VPR++ + R +S+ +K+FV GL + E
Sbjct: 81 VPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE 121
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L+EYFS+FG ++ ++ D+ TG+ RGFGFV F D
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD 56
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKITKL 661
D + YF FG V V+ D T + RGFGF+ +D + V++V L +L
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 181 PEHTRKLFIGGLDYRTTDSSLKEF 252
P TRK+F+GGL T+S K +
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTY 127
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 65.3 bits (152), Expect = 3e-11
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE KRAV
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAV 184
Query: 423 PREEIKRPEAS 455
P+E P S
Sbjct: 185 PKELSPGPSRS 195
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 420 VPREE---IKRPEASA---------TVKKLFVAGLKQDIEE 506
VPR++ + R +S+ +K+FV GL + E
Sbjct: 81 VPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE 121
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L+EYFS+FG ++ ++ D+ TG+ RGFGFV F D
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD 56
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKITKL 661
D + YF FG V V+ D T + RGFGF+ +D + V++V L +L
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 181 PEHTRKLFIGGLDYRTTDSSLKEF 252
P TRK+F+GGL T+S K +
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTY 127
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/89 (34%), Positives = 53/89 (59%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K + ++G++ D +VMKD T RS+GFG++T++ A A H + RI+E K A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE-HFLGNRILEVKVA 77
Query: 420 VPREEIKRPEASATVKKLFVAGLKQDIEE 506
P+EE+++P T ++FVA + + E
Sbjct: 78 TPKEEMRQPAKKVT--RIFVARIPSSVSE 104
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 434
E++GEI D+ + KD +K+ +G GFIT+S A V++ + H + G V RA P+E+
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED-THDLGGTTVAVDRATPKED 170
Query: 435 IKRP 446
P
Sbjct: 171 DHPP 174
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 437
++G I D + KDPK +GFGF+T+++ + D R H+I G+ V A P +E
Sbjct: 262 RFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEICGQEVAIDSATPLDE- 319
Query: 438 KRPEASAT 461
P A A+
Sbjct: 320 AGPSAGAS 327
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
DLR+YF FG+I + D + RGFGFV F + DRV
Sbjct: 255 DLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV 297
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L++Y S FG++ V+ D+ TG+ RGFG+V F
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTF 51
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K+ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 109
Query: 423 PRE 431
P++
Sbjct: 110 PKD 112
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+ ++YF+ FG I V V+ D T + RGFGF+ +D + VD+V
Sbjct: 48 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 90
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K+ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 423 PRE 431
P++
Sbjct: 183 PKD 185
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80
Query: 420 VPREE----------IKRPEASATVKKLFVAGLKQDIEE 506
VPR++ ++ + KK+FV GL + E
Sbjct: 81 VPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTE 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LR+YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L K
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+ ++YF+ FG I V V+ D T + RGFGF+ +D + VD+V
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 163
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K+ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 423 PRE 431
P++
Sbjct: 183 PKD 185
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80
Query: 420 VPREE----------IKRPEASATVKKLFVAGLKQDIEE 506
VPR++ ++ + KK+FV GL + E
Sbjct: 81 VPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTE 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LR+YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L K
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+ ++YF+ FG I V V+ D T + RGFGF+ +D + VD+V
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 163
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/84 (35%), Positives = 49/84 (58%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 437
++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 41 KYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKGAG 99
Query: 438 KRPEASATVKKLFVAGLKQDIEEE 509
KK+FV G+ + E+
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTED 123
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+L+++F+ +GN+V V+ D ET + RGFGFV FD + VD +
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPK 413
+K ++G +V+ V++D +T RS+GFGF+ + +VDE ++ N D + VE K
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQ-VEIK 183
Query: 414 RAVPREEIKRPEAS 455
+A P++ + R S
Sbjct: 184 KAEPKKSLNRSPPS 197
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
++F +G I ++ D+ TG+ RGFGF+ F D VD+V
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV 76
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 151 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEF 252
P +G + + T+K+F+GG+ T+ LK+F
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDF 128
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/84 (35%), Positives = 49/84 (58%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 437
++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 41 KYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKGAG 99
Query: 438 KRPEASATVKKLFVAGLKQDIEEE 509
KK+FV G+ + E+
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTED 123
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+L+++F+ +GN+V V+ D ET + RGFGFV FD + VD +
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
++F +G I ++ D+ TG+ RGFGF+ F D VD+V
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV 76
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 362
+K ++G +V+ V++D +T RS+GFGF+ + +VDE
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 151 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEF 252
P +G + + T+K+F+GG+ T+ LK+F
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDF 128
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
K E++G DVVVM D T R +GFGF+TY V+ + H++ + VE KRA+
Sbjct: 137 KSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAI 196
Query: 423 PREEIKRPEASA 458
P+E I+ +A
Sbjct: 197 PKEGIQSNNGNA 208
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPV 628
L++YFS +G ++ V +K TGK RGFGFV F +D D V
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+ + YF FG V V+ D T + RGFGFV +D D V+ V
Sbjct: 135 EFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/66 (27%), Positives = 40/66 (60%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K+ ++G +++ VV K+ T + +GFGF+ ++ V +A + H I G+ V+ ++A
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD-THFILGKPVDVRKA 80
Query: 420 VPREEI 437
+ + E+
Sbjct: 81 IRKHEL 86
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR-EE 434
++GE+VD V+M D T +GFGF+T++ + V E H ID R V+ KR +PR ++
Sbjct: 88 KFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLEEDHVIDDRKVDLKRTLPRGDK 146
Query: 435 IKRPEASATVKKLFVAGLKQDIEEE 509
+A + +K+FV GL +EE+
Sbjct: 147 DTDIKAVSKTRKIFVGGLPPLLEED 171
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
+L+ YF +G+I+ ++ D TG+ RGFGFV F D VDR+
Sbjct: 172 ELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRL 214
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 428
+G+I++ +M D T RS+GFGF+T+ VD + + H++ + VE KRA P+
Sbjct: 180 YGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 521 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
YF FG +V ++TD+ TG RGFGFV F D ++V
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV 123
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LREYFS FG ++ V+V+ +K TG+ RGFGFV F D +DRV K
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/65 (36%), Positives = 40/65 (61%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ +GE++ V VM++ T R +GFGF+ +S ++D ++ H ID R V+ KRA
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK-HHIDNRDVDVKRA 80
Query: 420 VPREE 434
+ REE
Sbjct: 81 MSREE 85
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 431
E +G + D V+M D T+R +GFGF+++ VD + H ++G+ VE KRA+P++
Sbjct: 131 ETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKD 189
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
+ R YF T+G + ++ D+ T + RGFGFV FD D VD V LHK
Sbjct: 125 EFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLV-LHK 170
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKEF*SN-GEKL 273
KLFIGG+ + T ++ L+E+ SN GE L
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVL 33
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/72 (40%), Positives = 39/72 (54%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++R EQ+GEIV+ VV+ D T RSKG+GF+T+ +A A N IDGR A
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLA 97
Query: 420 VPREEIKRPEAS 455
+ RP S
Sbjct: 98 CLGAQKPRPPTS 109
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
R +R YF FG IV V+TDK TG+ +G+GFV F + + R C
Sbjct: 35 RDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRAC 80
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 422
++ E +G + DV +M D T R +GFGF+++ VD + H + G+ VE KRA+
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186
Query: 423 PRE 431
P++
Sbjct: 187 PKD 189
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 434
+GE+ +VM+D T R +GFGF+ +S ++D + H ID R V+ KRA+ REE
Sbjct: 29 YGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK-HSIDTREVDVKRAMSREE 85
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
+ R+YF +G + V+++ D+ T + RGFGFV FD D VD V LHK
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV-LHK 170
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
LRE+F+ +G + V+ DK TG+ RGFGFV F D +DRV K
Sbjct: 22 LREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEF 252
LN S GD Y + T+K+F+GGL TD +++
Sbjct: 95 LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFRQY 129
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
E++GEIV V+ D T+RSKGFGF+T+ + A N H IDGR V K A
Sbjct: 30 ERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
L YF FG IV VV D T + +GFGFV F + + R C
Sbjct: 25 LISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
LR YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 228 HRFFIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
H+ ++ EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
LR YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 228 HRFFIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
H+ ++ EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++R YF FG I+ ++TDK TGK +G+GFV F D D R
Sbjct: 32 EMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATR 73
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
++R +Q+GEI++ V++ D T +SKG+GF+T+ + A + IDGR
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
LR+ F+ FG++V V+ D+ETG+ RGFGFV F+D
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREEI 437
+G++VD V+ D +T RS+GFGF+ ++ A + K ++GR + A R
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117
Query: 438 KR 443
R
Sbjct: 118 PR 119
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKE 249
KLFIGGL + T D+SL++
Sbjct: 36 KLFIGGLSWGTDDASLRD 53
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
LR+ F+ FG++V V+ D+ETG+ RGFGFV F+D
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREEI 437
+G++VD V+ D +T RS+GFGF+ ++ A + K ++GR + A R
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117
Query: 438 KR 443
R
Sbjct: 118 PR 119
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKE 249
KLFIGGL + T D+SL++
Sbjct: 36 KLFIGGLSWGTDDASLRD 53
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++R YF FG I+ ++TDK TGK +G+GFV F + D R
Sbjct: 32 EMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
++R EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++R YF FG I+ ++TDK TGK +G+GFV F + D R
Sbjct: 32 EMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
++R EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +3
Query: 228 HRFFIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
H+ +K+ EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
+ ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +3
Query: 228 HRFFIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
H+ +K+ EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
+ ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +3
Query: 228 HRFFIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
H+ +K+ EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
+ ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
LR +F +G+I+ V+TDK TG+ +G+GFV F D + R C+
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
++R +Q+G+I++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
+ L +F FG I+ V+VV D+ET + +G+GFV F D + R C
Sbjct: 26 KEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC 71
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 434
+++GEI+ V V+ D +T RS+G+GF+T+ A A + I+GRI K A +
Sbjct: 34 KRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLAFVGAK 93
Query: 435 IK 440
+K
Sbjct: 94 VK 95
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+DL + FS FGN++ ++ D++TGK R FGFV F++
Sbjct: 21 KDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
Score = 31.5 bits (68), Expect = 0.52
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
I ++G ++D ++ D T +S+ FGF+T+ + + +A
Sbjct: 26 IFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
LR++F +G I+ V+ DK TG+ +G+GFV F D + R C
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
+++ EQ+GEI++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
DL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/42 (30%), Positives = 28/42 (66%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++R Q+G+++D ++ D ++ RS+GFGF+T+ + +A
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
DL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 416
++R Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 417 AVPR 428
A R
Sbjct: 82 AQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
DL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 416
++R Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 417 AVPR 428
A R
Sbjct: 82 AQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
DL+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 416
++R Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 417 AVPR 428
A R
Sbjct: 82 AQSR 85
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
R LR+ F +G++V VV DK +G+ RGFGF+ FD+ +D
Sbjct: 21 RGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMD 62
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
++ E++G +V+ V+ D + RS+GFGFIT+ + +DEA +DGR + +
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 417 AVPRE 431
A P +
Sbjct: 83 AQPHQ 87
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
RDL FS FG+I+ ++ +++TG+ RGFGF+ F D +D
Sbjct: 21 RDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
++R ++G+I+D +M + T RS+GFGFIT++ +DE+ + R++ R
Sbjct: 23 LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNR 82
Query: 417 AVPR 428
A P+
Sbjct: 83 AEPK 86
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDY 619
DLR YF FG +V +VV++ G+ +G+GF+ F DY
Sbjct: 27 DLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDY 63
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGR 398
++R EQ+G++VD V+ + RSKG+GFIT+ V QN++P IDGR
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKP-IIDGR 80
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
LRE F+ +G +V V+ D+ETG+ RGFGFV F
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
++ ++GE+VD V+ D +T RS+GFGF+T++ + A Q + GR+V+
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
Query: 417 AVPR 428
A R
Sbjct: 116 ANDR 119
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPK 413
++ +G +VD +VM+D T RS+GFGF+TYS + A + K ++GR V K
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
LRE FS +GN+V V+ D+ T + RGFGFV + + +
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L++ F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
+K+ +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKE-F*SNGE 267
KLF+GGL + T DSSLK+ F S GE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGE 60
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L++ F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
+K+ +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 196 KLFIGGLDYRTTDSSLKE-F*SNGE 267
KLF+GGL + T DSSLK+ F S GE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGE 60
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 404
+K +G+IVD VV+ D ++ S+GFGF+TY + + A +K +DGRI+
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L+E F +FG IV VV D+E+G RGFGFV +D +
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIE 88
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
L + FS G +V VV D+ETG+ RGFGFV D D ++
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVP 425
+ EQ G + V+ + +T +S+GFGF+T S + A + + ++GR++ +A P
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 228
Query: 426 REEIKRPEASATVK----KLFVAGLKQDIE 503
R RPE + V +++V L D++
Sbjct: 229 RG--SRPERAPRVYEPAFRVYVGNLPWDVD 256
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++++ + G++V+ V+ D +T RS+GFGF+T S ++EA
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
F G + V+ ++ET + RGFGFV D +
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 44.8 bits (101), Expect = 5e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
LRE FS +G +V ++ D+ETG+ RGF FV F
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +3
Query: 234 FFIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 413
F ++ ++GE+VD ++ D +T RS+GF F+T++ A + GR +
Sbjct: 48 FGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVN 107
Query: 414 RAVPR 428
A R
Sbjct: 108 YATER 112
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 44.0 bits (99), Expect = 9e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
R L F+ +G+++ ++ D+ETG+ RGFGFV F D
Sbjct: 22 RALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 428
Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR + A R
Sbjct: 30 QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 44.0 bits (99), Expect = 9e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
R L F+ +G+++ ++ D+ETG+ RGFGFV F D
Sbjct: 22 RALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 428
Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR + A R
Sbjct: 30 QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ + +G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 420 VPREEIKRPE-ASATVKKLFVAGLKQDI 500
+ + A +++K++VA + D+
Sbjct: 151 ASGNQGTGSQIADISMRKIYVANVPFDM 178
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
LR FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ + +G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 420 VPREEIKRPE-ASATVKKLFVAGLKQDI 500
+ + A +++K++VA + D+
Sbjct: 151 ASGNQGTGSQIADISMRKIYVANVPFDM 178
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
LR FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
L FS G +V VV+D+ETG+ RGFGFV+ + + V+
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +3
Query: 249 ILEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRA 419
+ EQ G EI +V+ +D T +S+GFGF+T S ++A + +++GR + RA
Sbjct: 132 LFEQAGTVEISEVIYNRD--TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 420 VPR--EEIKRPEASATVKKLFVAGLKQDIE 503
PR ++P +++V L D++
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVD 219
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++R+ + G++VD V+ D +T RS+GFGF+ S + V+ A
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREEI 437
+G++VD V+ D + RSKGFGF+TY+ ++A+ K +DG ++ A PRE
Sbjct: 57 FGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP- 115
Query: 438 KRP 446
+RP
Sbjct: 116 RRP 118
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/41 (34%), Positives = 29/41 (70%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
L++ F++FG +V V+TD+++G+ +GFGFV + + ++
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEK 90
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
DL FS +G IV V+++ DK TGK +GF F+ ++D
Sbjct: 51 DLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 374
+ Q+GEIVDV +++D T +SKGF F+ Y A +N
Sbjct: 55 VFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 416
++++ +G+I + +++D +T+R KGFGFIT+ +A + KI DGR++ +
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV 82
Query: 417 AVPREEIK 440
A EE++
Sbjct: 83 AKNAEEVR 90
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
+ LR+ FS FG I ++ D ET + +GFGF+ FD D
Sbjct: 21 QSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSED 59
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+ L++ FS+FG + V + DK +G+ RGFGFV+F
Sbjct: 55 QSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 31.1 bits (67), Expect = 0.68
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 344
+K +GE+ +V + D + RS+GFGF+ +++
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L++ F FGNIVS V T E GK RG+GFV+F+ D
Sbjct: 128 LQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQED 163
Score = 35.5 bits (78), Expect = 0.032
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+LR++FS G I S ++ D E GK +GFGFV F
Sbjct: 319 ELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCF 351
Score = 35.1 bits (77), Expect = 0.042
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
LRE F+ FG IVS+++ D E RG+ FV FD+ + R
Sbjct: 217 LREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR 256
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYS 341
+++ Q G I +M D K K SKGFGF+ +S
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
LRE G +VS +VTD+ETGK +G+GF E+ D
Sbjct: 25 LREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKD 59
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
++G+I++ V++ D T+RSKG+GF+T+ A A + I+GR
Sbjct: 39 KYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGR 85
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 518 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
++F +G+I+ +++DK T + +G+GFV F D R C
Sbjct: 35 DHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
++ +FS FG + V V +K+TGK + FGF++F+D
Sbjct: 75 EIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFED 110
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQNN---RPHKIDGRI 401
I+ Q+G + V V ++ KT +SK FGFI + A + A N+ H + +
Sbjct: 76 IEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHV 135
Query: 402 VEPKRAVP 425
+EP+ P
Sbjct: 136 IEPENVKP 143
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 416
++ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 324
Query: 417 AVPR 428
A R
Sbjct: 325 AEAR 328
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
L + F + GN+ V V+ DK TG+ RGFGFV
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 398
+ ++ E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 33.9 bits (74), Expect = 0.097
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 416
++ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 417 AVPR 428
A R
Sbjct: 333 AEAR 336
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
L + F + GN+ V V+ DK TG+ RGFGFV
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 398
+ ++ E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 33.9 bits (74), Expect = 0.097
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
DL E F FG + V V D++TG RGFGFV F + R
Sbjct: 228 DLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQR 269
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 416
+ + +G + V V D KT S+GFGF+ + A N + D I+ +
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEW 288
Query: 417 AVPR 428
A PR
Sbjct: 289 ATPR 292
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+L+ F +G I SVV DK+TG+ +GFGFV F
Sbjct: 178 NLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K E +GEI + V+ D T R+KGFGF+ + A N ++ R V A
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPA 238
Query: 420 VPREEIKRPEASATVKKL 473
P K E V+ +
Sbjct: 239 RPFNSGKPREQQQPVESV 256
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 607
+++LR +FS G + V V TD+ETG RGF +++
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+ LRE+FS+ G I +VSV D++TG +G ++EF +
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
R D+ +F G +V V T+++ G RGFG VEF
Sbjct: 310 RADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L++ FS+F + V+T+K TG+ RG+GFV F D
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
LR +FS FG IVS V+ D++TG+ R F F+ F
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
L + F FG ++SV V + +TG+ RG G+V
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ ++G IV V+ D KT R++ F F++++ D A + +G E +R
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-----FNGTQYEGRRI 282
Query: 420 VPREEIKRPEA 452
+ RE I++ E+
Sbjct: 283 IVREGIEKSES 293
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFIT 335
+ + +G ++ V V ++P+T S+G G++T
Sbjct: 127 MFQPFGTVISVEVSRNPQTGESRGSGYVT 155
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
DL+ F +G I S V+ D E GK +GFGFV F++ D R
Sbjct: 44 DLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAAR 84
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
+K ++G+I VVMKD + K SKGFGF+ + A A ++ HK D + R
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 103
Query: 417 AVPREE 434
A + E
Sbjct: 104 AQKKSE 109
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
+ L E FS G IVS V TD G+ RG+GFV+FD D
Sbjct: 148 KTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTED 185
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
LRE F+ FG I S V+ D +G +G GFV F RV
Sbjct: 344 LRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRV 384
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ + ++G I VM+DP + SKG GF+ +S A N K+ G
Sbjct: 344 LRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 420 VPREEIKRPEASATVKKL 473
R+E +R + A ++
Sbjct: 403 AQRKEERRAKLQAQFSQM 420
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
L +YF+ +VSV V D T G+G+V + + D ++
Sbjct: 62 LYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+ +L+ F ++G I SVV DK+TG+ +G+GFV F
Sbjct: 421 QENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 404
+K E +GEI + V+ D T R KG+GF+ + EA ++ RIV
Sbjct: 424 LKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIV 478
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLH 646
R L F +G I ++ ++TG+ RGFGF+ F D D H
Sbjct: 26 RQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
++ +++G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 417 AVPR 428
A P+
Sbjct: 88 AEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLH 646
R L F +G I ++ ++TG+ RGFGF+ F D D H
Sbjct: 26 RQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
++ +++G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 417 AVPR 428
A P+
Sbjct: 88 AEPK 91
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 542 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
IVSV V+ +K G G+GFVEF+ +D D+V
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 512 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L E FS + ++ + VV D TG+ +G+GFV F D
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 542 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
IVSV V+ +K G G+GFVEF+ +D D+V
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 512 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L E FS + ++ + VV D TG+ +G+GFV F D
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPRE 431
E++ + V+ D T RSKG+GF+ + + +A K R + A PR+
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 432 --------------EIKRPEASATVKKLFVAGLKQDIEEE 509
+ RPE +FV GL + +E
Sbjct: 279 TNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++R YF GN++ V+++ DK TG+++G FV++ DR
Sbjct: 135 EIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 395
++ I Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 396 -RIVEPKRAVPRE 431
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
++R YF GN++ V+++ DK TG+++G FV++ DR
Sbjct: 135 EIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 395
++ I Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 396 -RIVEPKRAVPRE 431
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
L + F + GN+ V V+ DK TG+ RGFGFV V+
Sbjct: 107 LAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 416
++ + + G++V+ V+ D + RSKGFGF+TY + V A ++ +DGR +
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
Query: 417 AVPR 428
A R
Sbjct: 280 AEAR 283
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
L FS G +V V+ D+++G+ +GFGFV +D V
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 398
+ ++ E G + V V+ D T RS+GFGF+T S V+ AQ +++DGR
Sbjct: 107 LAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR 160
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
+ DLR+ F FG + + + D TG RGFGFV+F DP D
Sbjct: 49 QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF--MDPAD 89
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 404
+++ EQ+G + D+ + +D T +GFGF+ + +A+ H +DG ++
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK----HHMDGYLL 102
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 542 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
IVS+ V+ +K G G+GFVEF+ +D D+V
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 512 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L E FS + ++ + VV D TG+ +G+GFV F D
Sbjct: 215 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 250
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
DL++ FS FG IVSV + K G GFV+F
Sbjct: 321 DLKQPFSEFGEIVSVKIPVGK------GCGFVQF 348
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 398
+ +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 499 LFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 398
+ +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 499 LFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
L FS G +VSV V+ +K TG+ G+GF+EF + +R
Sbjct: 40 LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 512 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEF 610
L+E F + ++ VVTD TG+ +G+GFV+F
Sbjct: 132 LQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 285 VMKDPKTKRSKGFGFITYSQ 344
V+ DP T RSKG+GF+ +++
Sbjct: 148 VVTDPSTGRSKGYGFVKFAE 167
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 237 FIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY 338
++ Q GE+V V V+++ T + +G+GFI +
Sbjct: 39 YLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +3
Query: 237 FIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRIV 404
F+KR +GEI +V ++KD KRSKG+ FI ++ A + E + R + +GR++
Sbjct: 55 FLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY--NGRMI 111
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
+L E+FSTFG I V +V DKET + RG ++
Sbjct: 276 ELMEHFSTFGKISEVHLVLDKETKRSRGIAYI 307
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 536 GNIVSVSVVTDKETGK--KRGFGFVEFDDYDPVDRV 637
G I+SV+++ K+ K G+GFVEFD + V
Sbjct: 596 GKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSV 631
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITY----SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 428
+G+I +V ++ D +TKRS+G +I Y A ++E N+ GR++ A R
Sbjct: 284 FGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNS---SFQGRLLHILPAKHR 340
Query: 429 E-EIKRPEASATVKKLFVAGLKQDIEEE 509
E K+ ++ + K F KQ EE+
Sbjct: 341 ETSDKQVNDTSNLPKTF----KQKREEQ 364
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 407
+ +I + G +VDV ++ D T RS+GFGF+T EA Q +I GR V+
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVK 188
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
+L + F G +V V +V DK T + RGFGFV
Sbjct: 131 ELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Score = 33.9 bits (74), Expect = 0.097
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
L++ F ++ V+ ++ TG+ RGFGF+ F+ + V
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENV 273
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 270 IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREE 434
++ V+ + T RS+GFGFI++ A V A +++GR + A RE+
Sbjct: 245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 512 LREYFSTFGNIVS-VSVVTDKETGKKRGFGFVEFDDYDPVD 631
L + FS FG I S ++ D +TG RGFGF+ +D ++ D
Sbjct: 128 LYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASD 168
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 285 VMKDPKTKRSKGFGFITYSQAHMVDEA 365
+M+DP T S+GFGFI+Y D A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAA 170
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
+ + F+ FG + ++ D+ETG+ +GF FV F D D
Sbjct: 58 QSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDED 96
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 398
I+R ++GE+ D ++ D +T RSKGF F+T+ + A ++DGR
Sbjct: 60 IERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGR 113
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 407
+ ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 407
+ ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 413
+KR+ ++GEI VVMKD + K S+ FGF+ + +A EA K++G +V+ K
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKA----EAAVTAIEKMNGVVVDEK 187
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
DL+ F FG I S V+ D E GK R FGFV F+
Sbjct: 134 DLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFE 167
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 82 FAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L + +++ ++ VV D+ TG+ +G+GFV F D
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSD 206
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 380
GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 82 FAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L + +++ ++ VV D+ TG+ +G+GFV F D
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSD 206
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 380
GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
LR F+ FG + VVTD+ +G +GFGFV +
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 416
++ Q+GE+ D V+ D + SKGFGF+ Y+ + K +DG ++ +
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131
Query: 417 AVPREE 434
A PRE+
Sbjct: 132 ARPREQ 137
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
+ DLR F FG + + + D TG RGFGF++F DP D
Sbjct: 50 QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF--MDPAD 90
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 404
++R EQ+G + D+ + +D T +GFGFI + EA+ H++DG ++
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK----HQMDGYLL 103
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
LR+ F FG + V + D ETG+ +GFGF++F
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 35.9 bits (79), Expect = 0.024
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
RD+ E+FS G + V ++ D+ + + +G G++EF D
Sbjct: 182 RDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--NNRPHKIDGRIVE 407
+++I E +G + V + DP+T + KGFGFI + Q AQ N +I GR ++
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK 338
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYD 622
+LRE F FG + V + D +G+ RGF FVEF D YD
Sbjct: 62 ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYD 100
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 416
++ E++G + DV + +D + + +GF F+ + A+ EAQ + + GR E
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGR--EITV 120
Query: 417 AVPREEIKRPE 449
V E KRPE
Sbjct: 121 VVASESRKRPE 131
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
R L F +G I +VV DK TGK +GFGFV F
Sbjct: 117 RETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
+ E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 123 VFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 503 RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
R L F +G I +VV DK TGK +GFGFV F
Sbjct: 117 RETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
+ E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 123 VFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
RD+ E+FS G + V ++ D+ + + RG G+VEF D
Sbjct: 196 RDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYD 232
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
DLR+ F +FG++ V V D ETG +GFGFV+F
Sbjct: 300 DLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQF 332
Score = 34.3 bits (75), Expect = 0.073
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN-NRPHKIDGRIVEPKR 416
++++ E +G + V V +D +T KGFGF+ +++ A N N +I GR ++
Sbjct: 301 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSA 359
Query: 417 AVPREEIKRPEASAT 461
+ E+ PEA T
Sbjct: 360 VTDQTEV--PEAGQT 372
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
DL E F FG + V D++T RGFGFV F + R
Sbjct: 189 DLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQR 230
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 416
+ + +G + V D KT S+GFGF+++ A N + D I+ +
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249
Query: 417 AVPREEI 437
+ P+ ++
Sbjct: 250 STPKTQL 256
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLH 646
FS FG ++ SV+ G+ RGF F+EF+ D R LH
Sbjct: 37 FSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
+RE +FG + +V D+ETG +G+ F + D D C
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++ +LE +G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
+RE +FG + +V D+ETG +G+ F + D D C
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++ +LE +G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
+RE +FG + +V D+ETG +G+ F + D D C
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++ +LE +G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/55 (30%), Positives = 34/55 (61%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 404
++ E +GE+V+V ++ D +KRSKG+ F+ Y+ +EA +++G+I+
Sbjct: 298 LRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT----TEEAAGTALKEMNGKII 348
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
+ LR F FG +V V ++ DK + + +G+ F+E+
Sbjct: 296 KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEY 330
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 154 SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLK 246
S DD E P T+KLFI GL + T++ +L+
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLR 299
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
DL FS FG +VS V+ D +TG + F+EF++ + ++
Sbjct: 258 DLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQ 299
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
+K++ GE+ +V ++K+P+TK+SKG F+ ++ A
Sbjct: 230 LKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L E FS+FG I+S V D TG+ +G+GFV+F+
Sbjct: 152 LFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFE 184
Score = 34.3 bits (75), Expect = 0.073
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L+E FS +GN+ S V+ + + G RGFGFV + +
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSN 381
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+K + ++G + VM +P+ S+GFGF+ YS A + K+ GR
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 420 VPREEIKRPEASATVKKLFVAG 485
R+E +R A ++ G
Sbjct: 407 AQRKEDRRAHLQALFSQIRAPG 428
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA-----VP 425
+G I+ V D T RSKG+GF+ + + +E+ K++G ++ K+ +
Sbjct: 159 FGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 426 REEIKRPEASATVK--KLFVAGLKQDIEEE 509
R+E R E + T + ++V L ++I E+
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGED 243
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L F FG+I+S VV +E G+ +GFGFV+FD
Sbjct: 128 LERMFCPFGSILSCKVV--EENGQSKGFGFVQFD 159
Score = 35.1 bits (77), Expect = 0.042
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
LRE F +G IVS V+ E G+ +GFGFV F +
Sbjct: 320 LREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSN 353
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L FS +G + SV V+ D G+ RGFGFV F
Sbjct: 218 LHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNF 249
Score = 31.9 bits (69), Expect = 0.39
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
++ I +G+IV VM + RSKGFGF+ +S E ++G +V+ K
Sbjct: 320 LREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNC----EESKQAKRYLNGFLVDGKPI 374
Query: 420 VPREEIKRPEASATVKKLFVAGLKQ 494
V R ++ + +++ F A +Q
Sbjct: 375 VVRVAERKEDRIKRLQQYFQAQPRQ 399
Score = 31.5 bits (68), Expect = 0.52
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 428
+ Q+G + VVVM+D RS+GFGF+ + +A + + G + K+
Sbjct: 221 LFSQYGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMES----LCGLQLGSKKLFVG 275
Query: 429 EEIKRPEASATVKKLF 476
+ +K+ E +K+ F
Sbjct: 276 KALKKDERREMLKQKF 291
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKI 652
RDL ++F+ G + V +V D T + RGFGF+ +R C+ +
Sbjct: 59 RDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR-CIRSL 106
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 404
G++ DV ++ DP T+ S+GFGFI+ + + H + GR++
Sbjct: 69 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKI 652
RDL ++F+ G + V +V D T + RGFGF+ +R C+ +
Sbjct: 89 RDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR-CIRSL 136
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRA 419
G++ DV ++ DP T+ S+GFGFI+ + + H + GR++ ++A
Sbjct: 99 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 643
L E FS G +V +V D+ + + +GFGFV F D + +
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 368
G++V+ ++ D + RSKGFGF+T++ A DEAQ
Sbjct: 58 GQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 35.9 bits (79), Expect = 0.024
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
D+R++F G + S+ ++ K+TGK RG + +F D
Sbjct: 666 DIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 35.9 bits (79), Expect = 0.024
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
D+R++F G + S+ ++ K+TGK RG + +F D
Sbjct: 666 DIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
++L F +FG ++S V DK TG + FGFV +D
Sbjct: 363 QELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYD 398
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 416
++ EQ+G ++ + ++ D R KGF F+ Y ++ + Q +DGR++ +
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEE 152
Query: 417 AVPREEIKR 443
A R ++ R
Sbjct: 153 AKTRSDMSR 161
Score = 35.5 bits (78), Expect = 0.032
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
LR+ F FGN++ +++V DK + +GF F+ ++
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYE 126
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 640
+RE +FG + ++V D+ETG +G+ F + D D C
Sbjct: 391 IRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
I+ +LE +G + ++KD +T SKG+ F Y + D A
Sbjct: 391 IRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L E FS FG I+S V D +G+ +G+GFV++D
Sbjct: 149 LHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD 181
Score = 35.1 bits (77), Expect = 0.042
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVPREE 434
Q G++V V V +D T+RS G+G++ Y+ A N ++GR + +V
Sbjct: 67 QAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPS 126
Query: 435 IKRPEASATVKKLFVAGLKQDIEEE 509
+++ + V +F+ L + I+ +
Sbjct: 127 LRK----SGVGNIFIKNLDKSIDHK 147
Score = 35.1 bits (77), Expect = 0.042
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+L + F FG S ++ D E GK +GFGFV F++ D R
Sbjct: 239 ELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAAR 279
Score = 34.3 bits (75), Expect = 0.073
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
LRE+F+ FG I S V+ D +G RG GFV F + R
Sbjct: 343 LREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATR 382
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/85 (24%), Positives = 42/85 (49%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
+ ++ ++G V+M+D + K SKGFGF+ + + D+A ++G+ + K
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENS---DDAA-RAVDALNGKTFDDKEW 294
Query: 420 VPREEIKRPEASATVKKLFVAGLKQ 494
+ K+ E +K+ F LK+
Sbjct: 295 FVGKAQKKSERETELKQKFEQSLKE 319
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L E F+ G +VSV V D T + G+G+V +
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNY 93
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 160 LYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 276 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 371
D VM D KT RS+GFGF+++ A N
Sbjct: 172 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 285 VMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRI 401
V+++ + +R KGFGF+ Y+ +A + + N +P+ + +I
Sbjct: 292 VIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQI 333
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
++L F FG ++S V DK TG + FGF+ +D
Sbjct: 353 QELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
++L F FG ++S V DK TG + FGF+ +D
Sbjct: 344 QELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 637
F+ G S V+ +K TG+ G+GF+EF + +RV
Sbjct: 80 FAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Score = 34.7 bits (76), Expect = 0.056
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 527 STFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
+ +G++ VV D+ TG+ +G+GFV F D
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE-F*SNGEKL 273
N + + +GD+ +P +T +F+GGLD TD LK F GE L
Sbjct: 246 NTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKSIFGQFGELL 287
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 35.1 bits (77), Expect = 0.042
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHK 649
D+ ++F+ G +VS+ ++ + E GK G+GFVEF D + +K
Sbjct: 259 DIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENK 304
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++ + + G++V V + P T +S GFGF+T+S V+ A
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 35.1 bits (77), Expect = 0.042
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGR----IV 404
IKR E +G I V ++ D T + KG+ FI Y + A KIDGR V
Sbjct: 154 IKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
Query: 405 EPKRAVPREEIKR 443
E R VP +R
Sbjct: 214 ERGRTVPNWRPRR 226
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
++ F ++G I V +VTD+ T K +G+ F+E+
Sbjct: 154 IKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.1 bits (77), Expect = 0.042
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L E FS+FG I+S V D G+ +G+GFV+F+
Sbjct: 148 LYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFE 180
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITY 338
+K+ ++G+I VVMKD ++ S+ FGF+ +
Sbjct: 241 LKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNF 272
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 398
+K + ++G + VM + + S+GFGF+ YS A K+ GR
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGR 395
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 164 LFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 276 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 371
D VM D KT RS+GFGF+++ A N
Sbjct: 176 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.1 bits (77), Expect = 0.042
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L+E F FG ++ V + D+ RG G+VEF
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 416
+K I +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 417 AV-PREEIKRP 446
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.1 bits (77), Expect = 0.042
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L+E F FG ++ V + D+ RG G+VEF
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 416
+K I +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 417 AV-PREEIKRP 446
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 395
E++G + D+ + ++ T +GFGF+ Y A EA HK+ G
Sbjct: 68 ERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 114
Score = 33.9 bits (74), Expect = 0.097
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
DLR+ F FG + + + + TG+ RGFGFV++
Sbjct: 62 DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 512 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L E FS + ++ S VV D TG+ +G+GFV F D
Sbjct: 218 LHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGD 253
Score = 33.9 bits (74), Expect = 0.097
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L FS G + SV V+ +K T + G+GFVEF
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
DLR+ FS FG +VSV + K G GFV+F D
Sbjct: 336 DLRQPFSQFGEVVSVKIPVGK------GCGFVQFAD 365
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 374
GE+ V V+++ T +S+G+GF+ + +E N
Sbjct: 132 GEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 34.7 bits (76), Expect = 0.056
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
D+ FSTFG + V+V+ D+ T + RG FV
Sbjct: 72 DIHTLFSTFGKVARVTVLKDRHTRQSRGVAFV 103
Score = 31.5 bits (68), Expect = 0.52
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 419
I + +G++ V V+KD T++S+G F+ Y D A+ R +D +I+ ++
Sbjct: 73 IHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE--DAAKAAR--SMDAKILNGRKL 128
Query: 420 VPREEIKRPEASATVKK 470
AS +KK
Sbjct: 129 TVSIAADNGRASEFIKK 145
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
LRE S +G I ++ +V TG RG+GFVE++
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYE 113
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGR 398
++ ++ ++G I ++ +++ T S+G+GF+ Y + A + H IDGR
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/40 (35%), Positives = 28/40 (70%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
+++++F T G + V+++TDK G+ +GF +VEF + + V
Sbjct: 107 EVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAV 145
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 404
++R+ +G ++ V ++ D ++ R K +GF+T+S D+A + K I GR V
Sbjct: 23 VRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.097
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +3
Query: 285 VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATV 464
++KD +T+R KGFGFIT+ D+AQ ++G+IV R + E K EA T
Sbjct: 97 LIKDQQTQRPKGFGFITFESE---DDAQ-KALKALNGKIVN-GRLIFVETAKEVEAPTTS 151
Query: 465 KK 470
K
Sbjct: 152 LK 153
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+ LR+ F+ F ++ D++T + +GFGF+ F+ D +
Sbjct: 85 QSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQK 122
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 33.9 bits (74), Expect = 0.097
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 237 FIKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 347
F+ ILE G + + +DP TK+ KGFGF + A
Sbjct: 218 FMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESA 254
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L + F+ F V+ DK TGK +G+GFV F
Sbjct: 153 LSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 404
+ + Q+G+++ V V+ D R KGF ++T+S ++A +DGR+V
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 512 LREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L E F + + ++ VV D+ TG+ +G+GFV F D
Sbjct: 189 LTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFAD 224
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
L F G + V+ +K+ G G+GF+EF ++ +R
Sbjct: 96 LMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L +F+ FG ++ +VTD TG+ G ++EF
Sbjct: 532 LSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/40 (32%), Positives = 28/40 (70%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
+++++F + G + V+++TDK G+ +GF +VEF + + V
Sbjct: 118 EVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAV 156
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 32.7 bits (71), Expect = 0.22
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L++ FS FG + +V ++ ++ T + G+G+V F+
Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 107
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 32.7 bits (71), Expect = 0.22
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
L++ FS FG + +V ++ ++ T + G+G+V F+
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 126
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
D+R+ F +GN+ + + DK TG++ + F+++
Sbjct: 125 DIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 479 SWTEARH*RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
SWT L F G++V VV D +TG+ RG+GFV
Sbjct: 185 SWTVTSE---SLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIV 404
G++V V+ D T RS+G+GF+ Y S+A M ++ +++GR +
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 248
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 267 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREEIKR 443
E+V+V+ +D T +S+GF F+T S + +N + GR ++ A + K
Sbjct: 112 ELVEVLYNRD--TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKE 169
Query: 444 PEASATVKKLFVAGLKQDIEEET 512
P T KLFV L + E+
Sbjct: 170 PLYPETEHKLFVGNLSWTVTSES 192
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 622
L + F N V V+ +++TG+ RGF FV + +
Sbjct: 101 LAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
I+ Q G ++D+ + +D +T + KGF F Y + D A
Sbjct: 26 IMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
Score = 31.5 bits (68), Expect = 0.52
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 536 GNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
G ++ + + DKET K +GF F E++ + D
Sbjct: 31 GRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 613
++L F +FG ++S V DK TG + FG + FD
Sbjct: 362 QELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 401
+Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 161 KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
L E F +G I V DK +GK +G+GF+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 422
++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 267 KFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 401
+Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 161 KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
L E F +G I V DK +GK +G+GF+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 422
++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 267 KFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 401
+Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 161 KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 604
L E F +G I V DK +GK +G+GF+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 422
++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 267 KFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L + + ++ VV D TG+ +G+GFV F D
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGD 264
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L FS + SV V+ +K+T + G+GFVEF
Sbjct: 135 LHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEF 167
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 524 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
FS + V+ D++TG+ RGFGFV F
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 276 DVVVMKDPKTKRSKGFGFITY 338
D VM D KT RS+GFGF+++
Sbjct: 167 DARVMWDQKTGRSRGFGFVSF 187
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 261 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREEI 437
+G+I DV D ++ + FGF+T+ + A +N ++ GR++ A+P E+I
Sbjct: 36 FGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALP-EKI 94
Query: 438 KRPE 449
K E
Sbjct: 95 KGGE 98
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
L F FG+I V D+ K R FGFV F
Sbjct: 29 LHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At4g38440.1 68417.m05432 expressed protein
Length = 1465
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 479 SWTEARH*RRDLREYFSTFGNIVSVSVVTDKETGKK 586
+WTE RDLR FS GN+V VV+ ETG K
Sbjct: 308 AWTERVEAARDLR--FSFDGNVVEEDVVSPAETGGK 341
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 240 IKRILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
++ + E+ GEI +V +MKD + SKG+ F+ + + +A
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 521 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLHKITKL 661
+FS G IV + ++ D G+ G GFVEF+ + ++ K K+
Sbjct: 395 FFSDVGEIVHIRIIVD-HMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
Score = 30.7 bits (66), Expect = 0.90
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
D+ +F G +V V ++ + + GK G+GFVEF
Sbjct: 262 DIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVEF 294
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
++ +F+ +VSV +V + E GK G+GFVEF
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHE-GKHVGYGFVEF 205
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 31.1 bits (67), Expect = 0.68
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
G + +V+V+ DP T+ KG F+T++ V +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKA 502
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 307 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQNEQFQGKRLKDQ 447
++Q + L LKPI L + I G + E+ +EQF+GKRL ++
Sbjct: 4 KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 506 RDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEF 610
+ L+E+F GN+VS V+ + + G+GFV F
Sbjct: 203 KHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSF 238
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 276 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 371
D VM D KT RS+GFGF+++ A N
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 211
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 512 LREYFSTFGNIVS----VSVVTDKETGKKRGFGFVEF 610
L + FS F + S V+ D++TG+ RGFGFV F
Sbjct: 164 LFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
+++ +F T G + V+++ DK G+ +GF +VEF + + V
Sbjct: 104 EVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAV 142
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
+++ +F T G + V+++ DK G+ +GF +VEF + + V
Sbjct: 104 EVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAV 142
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 255 EQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 401
+Q+GEI D + D + +SKG+GFI + A KI R+
Sbjct: 149 KQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRM 197
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGF 595
L E+FS FG I + DK TG+ +GF
Sbjct: 243 LLEFFSRFGEIEEGPLGLDKATGRPKGF 270
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 369 NNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 509
+ +P +DGR+V K+A P +K P + + +GL ++I E+
Sbjct: 409 DTKPPFLDGRVVYTKQAEPVMPVKDPTSDMAIISRKGSGLVKEIREK 455
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
RD+R+ FS I SV + +KETG+ +G+ V+F D
Sbjct: 276 RDIRKLFSDCV-INSVRLGKNKETGEFKGYAHVDFKD 311
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 250 ILLMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 146
++L+ + F+ R HR ++ Q LH + R PK S
Sbjct: 46 LILLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
D++ FS G + V + + ETG +GF FV+F
Sbjct: 346 DIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+DL +F+ G + S +V + T RGF FV +R
Sbjct: 86 KDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYS 341
G++ ++ +P+T+ S+GF F+T S
Sbjct: 96 GKVASCFLVMEPRTRVSRGFAFVTMS 121
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 634
+DL +F+ G + S +V + T RGF FV +R
Sbjct: 85 KDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYS 341
G++ ++ +P+T+ S+GF F+T S
Sbjct: 95 GKVASCFLVMEPRTRVSRGFAFVTMS 120
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 488 EARH*RRDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
++R D+ YFSTFG + V + +KR FGFV F
Sbjct: 267 DSRFREEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTF 303
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +3
Query: 249 ILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEAQN 371
+ Q+G I+DVV +K PK +G ++T+S+ H V + QN
Sbjct: 33 LFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAGHAVRQMQN 74
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 512 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
L +YFS+FG I V V TG G+ +++ +
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKE 288
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 297 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 425
P+ K KGFG + + + +E++N +PH + GR+ + P
Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
R++ + FS +G +V + + K + G+ FVEFDD
Sbjct: 21 REVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDD 54
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
R++ + FS +G +V + + K + G+ FVEFDD
Sbjct: 21 REVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDD 54
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 616
R++ + FS +G +V + + K + G+ FVEFDD
Sbjct: 21 REVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDD 54
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 610
D+ +YFSTFG + V + +KR FGFV F
Sbjct: 171 DVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTF 200
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 264 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 365
GE+ +V +M++ + KG+ F+T+ + EA
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -2
Query: 234 ICGSIVESTDKKFTCXXXXXXXXXXXXRLHI*YLLDLSPKMLIIN*ELDFSLIC*VFVSA 55
+CG +VE++D K L + +LL S +L +N ++D FVS
Sbjct: 1477 VCGDVVETSDVKKKIIESLIKGDSSEVVLALKHLLIASAAILRLNLQIDGITFSPTFVSV 1536
Query: 54 VLNI 43
+ NI
Sbjct: 1537 LTNI 1540
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 246 RILEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 416
+IL +WG + V V+++ + S+GF FI + + H DG +++ ++
Sbjct: 316 QILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH--DGIVLDGRK 370
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 509 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 628
+L +G + V +K +GK +G+ VEF YDPV
Sbjct: 249 ELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF--YDPV 286
>At5g20370.1 68418.m02423 serine-rich protein-related contains some
similarity to serine-rich proteins
Length = 175
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 176 KNLNTHVNFLSVDSTIEPQILH*KNSRAMGRNCRCSCNERP 298
KNLN + F S S +P ++ ++ R C CS P
Sbjct: 39 KNLNLRLKFYSPGSIPKPSVVTVSSNHQTKRKCLCSPTTHP 79
>At3g25160.1 68416.m03141 ER lumen protein retaining receptor family
protein similar to SP|P24390 ER lumen protein retaining
receptor 1 (KDEL receptor 1) {Homo sapiens}; contains
Pfam profile PF00810: ER lumen protein retaining
receptor
Length = 272
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 652 DFVQAYSVNWIIIIKLYKTKAPFLSCFFICHN 557
DF S W+I + YK KA ++ C+N
Sbjct: 109 DFATLVSTLWVIYMIRYKLKASYIKSLDTCYN 140
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 524 FSTFGNIVSVSVV---TDKETGKKRGFGFVEF 610
F FG I SV ++ TD+E ++R GFV F
Sbjct: 199 FGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 243 KRILEQWGEIVDVVVMKDP-KTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 413
+ Q+G I +V+++K + +++ GFGFI Y+ +A + GRI+ K
Sbjct: 182 EEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
R++ + FS +G +V + + K + G+ FVEF+D D
Sbjct: 21 REVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDAD 59
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 506 RDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 631
R++ + FS +G +V + + K + G+ FVEF+D D
Sbjct: 21 REVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDAD 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,307
Number of Sequences: 28952
Number of extensions: 255731
Number of successful extensions: 1259
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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