Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0088.Seq
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 48 2e-06
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 44 2e-05
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 42 7e-05
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 41 2e-04
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 39 7e-04
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 39 9e-04
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 38 0.002
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.006
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 36 0.008
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.011
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 35 0.014
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 34 0.019
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 34 0.025
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 34 0.025
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.033
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 33 0.057
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.075
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.099
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.17
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.92
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 29 0.92
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 2.8
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 3.7
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 4.9
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 4.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 4.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 6.5
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 26 6.5
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICRRSLLPADP 102
L C+H FH +CI PWL+++ TC ICR P DP
Sbjct: 412 LPCKHYFHENCIKPWLRVNGTCAICR---APVDP 442
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICRRSLLPADPPP 108
L C H+ H C+ WL+ TCPICRRS++ P
Sbjct: 326 LPCGHILHFHCLRNWLERQQTCPICRRSVIGNQSSP 361
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 42.3 bits (95), Expect = 7e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICRRSL 87
+ C H+F +C+ WL+ H TCP+CR+ +
Sbjct: 125 MPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 41.1 bits (92), Expect = 2e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICRRSLLPAD 99
+ C H FH+ C+ W ++ TCP+CR L D
Sbjct: 54 IPCGHYFHNHCLESWCRVANTCPLCRTEFLKVD 86
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 39.1 bits (87), Expect = 7e-04
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 LECEHLFHSSCISPWL-QLHATCPIC 75
L CEH+FH+ CI W+ + A+CP+C
Sbjct: 221 LPCEHVFHTQCIDTWMTTMKASCPLC 246
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 38.7 bits (86), Expect = 9e-04
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICR 78
C HL+H C+ W++ + CP+CR
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCR 670
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHA-TCPICRRSL 87
L C H+FH +CI P+L ++ CP+C++S+
Sbjct: 515 LPCHHIFHPACIDPYLLKNSDLCPLCKQSV 544
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 35.9 bits (79), Expect = 0.006
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQL-HATCPICR 78
C+H FH +CI WL + +CP+CR
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPLCR 809
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 35.5 bits (78), Expect = 0.008
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 4 ECEHLFHSSCISPWLQLHATCPICRRSLLPA 96
EC H+F SCI+ W + CP+CR P+
Sbjct: 270 ECGHIFCWSCINGWTSKKSECPLCRAFSSPS 300
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 35.1 bits (77), Expect = 0.011
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 4 ECEHLFHSSCISPWL-QLHATCPICR 78
+C H FH CI WL +CP+CR
Sbjct: 543 QCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 34.7 bits (76), Expect = 0.014
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICRRSL 87
C HL+ S C+ WL+ ++CP+C+ L
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 1 LECEHLFHSSCISPWL-QLHATCPICRRSLLPADP 102
L C+H FH CI+ W+ CP C + P P
Sbjct: 337 LPCKHEFHRPCIAKWIVDYRHACPTCNTEVPPPKP 371
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 33.9 bits (74), Expect = 0.025
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 4 ECEHLFHSSCISPWLQLHAT---CPICRRSLLPAD 99
+C+H+FH+ CI WL + CP+ R++ + AD
Sbjct: 51 KCKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVAD 85
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 33.9 bits (74), Expect = 0.025
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICRR 81
C H FH CIS WL CP+ R
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNR 98
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 33.5 bits (73), Expect = 0.033
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQL--HATCPICRRS 84
C H FH+SC+ W + + CP+CR S
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLCRSS 1606
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 32.7 bits (71), Expect = 0.057
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICR 78
C H F S CI +L+ H CP CR
Sbjct: 44 CSHTFCSFCIRDYLREHPMCPACR 67
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 32.3 bits (70), Expect = 0.075
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICR 78
C+H FH C+ W +++CP+CR
Sbjct: 227 CQHTFHCPCLQKW--GNSSCPVCR 248
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 31.9 bits (69), Expect = 0.099
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 7 CEH-LFHSSCISPWLQLHATCPICRR 81
C H F SCI W+ TCPIC+R
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKR 62
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICRRSLLPADPP 105
C H + C+ WL+ +CP CR+ L P
Sbjct: 100 CGHTYCYECLLNWLKESKSCPTCRQKLYTQPSP 132
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 28.7 bits (61), Expect = 0.92
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICRRSLL 90
L C H H C +++ + CP C ++++
Sbjct: 288 LSCSHPLHQRCHEEYIRTNYRCPTCYKTII 317
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.92
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPI 72
L C H H+S S W H CP+
Sbjct: 872 LNCGHGAHASHASEWFSTHTICPV 895
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHAT---CPICRRSLLP 93
C H+F + CI L A CP+CRR + P
Sbjct: 221 CGHIFCNFCILSALGTTAATQKCPVCRRKVHP 252
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 568 LND*FTPTHTRAQYVSSRSPIGIDSSRDNRVVFDHNNTYLLRH 440
+ND + HT + + S P+ D DN V F + +L +H
Sbjct: 704 INDAYVVIHTLLKVIFSVVPLPFDVPVDNSVDFPYLRLFLEKH 746
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQ-LHATCPICRRSLLPAD 99
C H F S+C+ P+ + +TCP C +D
Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQCETPFSVSD 686
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 694 SCPTLRHTYSSVNNVTDERHDSQHSQDPLRQTLEISSASP*ALND 560
SC T +HT ++ + +R S +Q+ +++S SP +L+D
Sbjct: 325 SCETSQHTIANTPFLAYDRSPSLTNQEAESSFQDVASISPHSLSD 369
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 697 ESCPTLRHTYSSVNNVTDERHDSQHSQDPLRQTLEISSAS 578
E P+ H++ +N D HSQ+P + SS S
Sbjct: 104 EPSPSFNHSFFEKDNARDIPQQPSHSQNPSSSSSSSSSQS 143
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 7 CEHLFHSSCISPW 45
C H+FH SCI W
Sbjct: 216 CYHVFHLSCIRKW 228
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +1
Query: 7 CEHLFHSSCISPWL-QLHA--TCPICRR 81
C H +H CI P L + H +C ICR+
Sbjct: 210 CSHSYHYKCIRPTLNESHPYFSCFICRK 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,038
Number of Sequences: 5004
Number of extensions: 28996
Number of successful extensions: 115
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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