Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0088.Seq
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 42 5e-04
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 40 0.003
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 38 0.011
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 37 0.015
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 36 0.026
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.080
SB_45263| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0026) 34 0.14
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013) 33 0.24
SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_13493| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00046) 32 0.56
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 31 0.75
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 30 1.7
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 30 1.7
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 30 2.3
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 30 2.3
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 30 2.3
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 30 2.3
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 29 5.3
SB_9428| Best HMM Match : Vicilin_N (HMM E-Value=4.2) 29 5.3
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 28 7.0
SB_48132| Best HMM Match : CLN3 (HMM E-Value=5.9e-09) 28 7.0
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 28 7.0
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 28 9.2
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 28 9.2
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICRRSLLPAD 99
+ C+HLFH CI PWL+ +CP+CR LP D
Sbjct: 78 MPCDHLFHPGCILPWLEKTNSCPVCRHE-LPTD 109
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 41.9 bits (94), Expect = 5e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICRRSLLPAD 99
C H FH C+ PWL + TCP+C +++ D
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPLCMLNIVERD 262
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 40.3 bits (90), Expect = 0.002
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 1 LECEHLFHSSCISPWL-QLHATCPICRR 81
L C+H +H C+ PWL + TCP+C+R
Sbjct: 317 LPCDHAYHCKCVDPWLTEGKRTCPVCKR 344
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICRRSLLPADPPP 108
CEH + S+C+ WL + TCP R+SL P+D P
Sbjct: 33 CEHSYCSACVLGWLTHYNTCPEDRQSLWPSDLKP 66
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICRR 81
L C H + C+S WL+ + TCPICR+
Sbjct: 278 LVCGHKYCEPCLSRWLENNTTCPICRK 304
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICRRSLLPADP 102
C+H+F CIS W TCP+C R+ + DP
Sbjct: 499 CKHIFCEDCISLWFDREQTCPMC-RARVAGDP 529
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 36.7 bits (81), Expect = 0.020
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPI 72
L+C H+FH CI WL + CP+
Sbjct: 228 LQCRHVFHRDCIDSWLATQSICPV 251
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 36.3 bits (80), Expect = 0.026
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPICR 78
L C H F C+ WL+ TCPICR
Sbjct: 384 LTCSHSFCEYCLQSWLRKRNTCPICR 409
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 34.7 bits (76), Expect = 0.080
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPIC 75
+EC H F SCI WLQ CP+C
Sbjct: 1380 VECLHSFCRSCIVSWLQASYHCPVC 1404
>SB_45263| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0026)
Length = 123
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQ------LHATCPICRRSLLPADPPP 108
C+ H C+ W + LHATCP C + + P PPP
Sbjct: 20 CKQAAHHKCLDQWYKNQRYRGLHATCPHCLKEIFP--PPP 57
>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQ------LHATCPICRRSLLPAD 99
L C H + + CI PW++ +++TCP CR P D
Sbjct: 289 LPCLHHYCAKCIDPWIKTCSDQGINSTCPECRSPFKPGD 327
>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
Length = 499
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 4 ECEHLFHSSCISPWLQLHATCPICRRSLLPADPPP 108
+C+ +F S CI+ WL+ C CR L +D P
Sbjct: 346 QCDQIFCSGCITAWLRNAGACSSCRSVLEVSDIDP 380
>SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLH-ATCPICRRSLL 90
LEC H H C+ L+L ATCP+CRR L+
Sbjct: 42 LECGHGNHLKCV---LRLRSATCPVCRRPLV 69
>SB_13493| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00046)
Length = 488
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLH-ATCPICRRSLL 90
LEC H H C+ L+L ATCP+CRR L+
Sbjct: 305 LECGHGNHLKCV---LRLRSATCPVCRRPLV 332
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 10 EHLFHSSCISPWLQLHATCPICRRSLLPADP 102
+H+F S C+ WL+ + CP CR + P
Sbjct: 119 QHVFCSPCLDLWLRTNRYCPTCRTPINQDQP 149
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 1 LECEHLFHSSCISPWL-QLHATCPI 72
L C H FHS+CI WL CP+
Sbjct: 273 LPCRHNFHSACIRTWLTYTSCKCPL 297
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPICRRSL 87
C H+F +C++ L CPICR SL
Sbjct: 394 CGHVFCRACLNRSLDHRPGCPICRSSL 420
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLH--ATCPICRRSLLPADPPP 108
C H F SC+ WL +CP CR +L D P
Sbjct: 33 CGHSFCESCLETWLSRPEVQSCPSCRSHVLSLDLIP 68
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQL---HATCPICRRSLLP 93
C+H F CI WL + CP+C+ S+ P
Sbjct: 175 CDHYFCVLCICEWLDQTYNKSGCPVCKASISP 206
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQL---HATCPICRRSLLP 93
C+H F CI WL + CP+C+ S+ P
Sbjct: 49 CDHYFCVLCICEWLDQTYNKSGCPVCKASISP 80
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQL---HATCPICRRSLLP 93
C+H F CI WL + CP+C+ S+ P
Sbjct: 175 CDHYFCVLCICEWLDQTYNKSGCPVCKASISP 206
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Frame = +1
Query: 1 LECEHLFHSSCISPWL-----QLHATCPICR 78
L C H FH CI WL H CP CR
Sbjct: 576 LPCGHSFHQHCIEVWLAGDNTAPHHCCPNCR 606
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLHATCPI 72
C H+F S C+ W+ + TCP+
Sbjct: 72 CGHVFCSQCLVHWIAENGTCPL 93
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLH----ATCPICRRSLLP 93
C+ H C+ W+ H ATCP CR+ P
Sbjct: 28 CKQPCHFPCLWKWIHAHLTPRATCPHCRKGYRP 60
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQ 51
L C H FHS CI WL+
Sbjct: 377 LPCNHDFHSKCIDRWLK 393
>SB_9428| Best HMM Match : Vicilin_N (HMM E-Value=4.2)
Length = 122
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 427 RGVVRAAEDMYCYDRKRRDCHV-NCRCRSANAMRRTVR 537
RG R M YDR+RR C V N R R RRT R
Sbjct: 59 RGSPRQTGRMRPYDRQRRGCIVRNHRPRDRQQSRRTAR 96
>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLH----ATCPICRRSLLP 93
C+ H C+ W+ H ATCP CR+ P
Sbjct: 28 CKQPCHYICLWKWIHAHLTPRATCPHCRKGYHP 60
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPIC 75
+EC H F CI +L+ CP+C
Sbjct: 62 IECLHSFCRCCIVRYLETSYRCPVC 86
>SB_48132| Best HMM Match : CLN3 (HMM E-Value=5.9e-09)
Length = 357
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 433 VVRAAEDMYCYDRKRRDCHVNCRCRSANA 519
V D YC+ R R H+ RC + NA
Sbjct: 329 VTMVENDAYCFTRARTFEHITSRCHAKNA 357
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 553 TPTHTRAQYVSSRSPIG---IDSSRDNRVVFDHNNTY 452
T +HT+A VS+ SPIG + RDNR F + +
Sbjct: 434 THSHTKAVDVSTSSPIGGVPFSADRDNRTNFPSDRAF 470
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 1 LECEHLFHSSCISPWLQLHATCPIC 75
+EC H F CI +L+ CP+C
Sbjct: 30 IECLHSFCRCCIVRYLETSYRCPVC 54
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLH----ATCPICRRSL 87
C+ H C+ W+ H +TCP CR+ L
Sbjct: 24 CKQPCHHPCMWKWIHAHLTPRSTCPHCRKEL 54
>SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 539
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQLH----ATCPICRRSL 87
C+ H C+ W+ H +TCP CR+ L
Sbjct: 28 CKQPCHHPCLWKWVHAHLTPRSTCPHCRKGL 58
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +1
Query: 7 CEHLFHSSCISPWLQL---HATCPICRRSL 87
C+H F CI WL + CP+C+ S+
Sbjct: 175 CDHYFCVLCICEWLDQTYNKSGCPVCKASI 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,116
Number of Sequences: 59808
Number of extensions: 265622
Number of successful extensions: 845
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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