Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0086.Seq
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.0  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.0  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   9.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   9.2  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 367 GLRKRRPRPQESARY--VPRQPGYESQSTTEC 278
           G  KRR R Q S R   VPR PG +S    EC
Sbjct: 397 GSMKRRKRRQPSNRKTSVPRSPGGKSFVCPEC 428


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 457 NFNIDKPKFTFSSPLNHMYT 398
           N  ID P F F +PLN M T
Sbjct: 303 NDEIDSPNFFFPTPLNIMTT 322


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 371 FRVTEAEAAAPRVRTLRPATTRLRITVYYGMLRLLP 264
           F V  A+  AP V     AT   RI+V Y + R+LP
Sbjct: 315 FMVAAAKTVAPSVF----ATFAFRISVMYAVTRILP 346


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 141  SIGSHNAAVCVARCRTLNRSV--FRQPCETQRNAFCSTVRPIDG 266
            +I S N AV +   R L++S+  F++ C++    F + +R +DG
Sbjct: 937  TISSMNQAVNM-NFRELDKSIQEFKRKCQSMEREFKTELRKLDG 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,593
Number of Sequences: 5004
Number of extensions: 40077
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)