Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0086.Seq
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 35 0.035
12_02_0534 - 20103908-20105897,20106314-20107116 35 0.035
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 33 0.19
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 28 5.3
12_02_0735 - 22636835-22639502,22639755-22640734 27 7.1
05_05_0258 - 23656473-23657828 27 7.1
10_02_0160 - 6033956-6034140,6034327-6034594,6035739-6036107,603... 27 9.3
09_04_0350 + 16899076-16900164 27 9.3
06_03_0101 + 16659185-16660546 27 9.3
06_02_0284 - 13743771-13743796,13744241-13744448 27 9.3
05_03_0478 - 14526180-14526578 27 9.3
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = -2
Query: 231 YAVSHMADGKQTG*VSDTAQRTP-QRCAIRSTDPSFKRPAARRQLPAGRTVRARGIV 64
+ ++++DG+QTG + TAQ+ +R ++ +++ S+ P AR QL R++ G V
Sbjct: 511 FVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKV 567
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = -2
Query: 231 YAVSHMADGKQTG*VSDTAQRTP-QRCAIRSTDPSFKRPAARRQLPAGRTVRARGIV 64
+ ++++DG+QTG + TAQ+ +R ++ +++ S+ P AR QL R++ G V
Sbjct: 521 FVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKV 577
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = -2
Query: 231 YAVSHMADGKQTG*VSDTAQRTP-QRCAIRSTDPSFKRPAARRQL 100
+ ++++DG+QTG + TAQ+ +R ++ +++ S+ P AR QL
Sbjct: 427 FVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQL 471
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 35 NGFNKIHTNGTMPRARTVLPAGN*RRAAGLLKLGSVDRIAQRCGVRCAVS 184
NGF H +GT A T +G R AA LL R+ R +R V+
Sbjct: 209 NGFTMDHVSGTKVGATTFDSSGRRRSAADLLAFARPGRL--RVAIRATVT 256
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 257 WTHSTAERVTLCLTWLTENRPVKCPTPRNAHRSVV 153
W S A V +WL ++ P CP R A +V+
Sbjct: 356 WAMSVACEVWFAFSWLLDSLPKLCPVHRAADLAVL 390
>05_05_0258 - 23656473-23657828
Length = 451
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 100 QLTPRRRPLK-ARVCRSDRTTLRCALRGVG 186
Q P RRPL V R+D + CALRG G
Sbjct: 81 QHAPHRRPLPWILVPRADGPSFSCALRGCG 110
>10_02_0160 -
6033956-6034140,6034327-6034594,6035739-6036107,
6036787-6037499,6038289-6038493,6038721-6038933
Length = 650
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +1
Query: 25 FAKERIQQNSHERHDAARPHRSAG----RQLTPRRRPL 126
++KER+Q +SH R AAR H SA Q P++RPL
Sbjct: 132 WSKERLQTHSHSR-AAARRHASAHLCTIPQGYPQQRPL 168
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 128 LRGRRRGVSCRPAERCGRAASCR 60
L+ RRRG S RP RCG R
Sbjct: 6 LQPRRRGASGRPRRRCGEEQRIR 28
>06_03_0101 + 16659185-16660546
Length = 453
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 266 PVDWTHSTAERVTLCLTWLTENRPVKCPTPRNAHRSVVRSDRQTLALRGRR 114
P W+ T++RV + ++ R CP P++A R + + LRG R
Sbjct: 167 PGSWSW-TSQRVPVSVSVSQLQRDDVCPIPKSAIRQTHHLTAKVITLRGAR 216
>06_02_0284 - 13743771-13743796,13744241-13744448
Length = 77
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 342 GRGLRFRNPKGVVLNVIYLVYIWLSGDENVNFGLSMLKLAGR*RRFDDGPFGL 500
G F P V++ V++ + +WL + L+L R + DGP GL
Sbjct: 17 GAAAHFFLPAAVIVVVLHQLAVWLPPSPHTAADGRRLRLGRRGQAHPDGPRGL 69
>05_03_0478 - 14526180-14526578
Length = 132
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 31 KERIQQNSHERHDAARPHRSAGRQLTPRRRPLKARV 138
++R + H +HD R R G++ RRRP + V
Sbjct: 58 RQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRHAV 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,986,160
Number of Sequences: 37544
Number of extensions: 325228
Number of successful extensions: 969
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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