Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0086.Seq
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    36   0.021
SB_7076| Best HMM Match : IncA (HMM E-Value=0.74)                      34   0.063
SB_14157| Best HMM Match : IncA (HMM E-Value=0.2)                      31   0.44 
SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4)                     31   0.44 
SB_27705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_42528| Best HMM Match : Pkinase (HMM E-Value=1.3e-13)               29   1.8  
SB_33770| Best HMM Match : Troponin (HMM E-Value=8.9)                  29   2.4  
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 28   4.1  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            27   9.6  
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         27   9.6  
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)            27   9.6  

>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -2

Query: 336  SPHVTSRDNQVTNHSLLRNAKTFTRRLDAQYCRTRYAVSHMADGKQTG*-VSDTAQRTPQ 160
            S   T+ +++ T ++   N    T + D++   T+  V  +A  ++     SDT Q TP+
Sbjct: 3144 SKPTTNNNSKPTTNNKKVNLNN-TNKKDSELTETQEIVQEVAPKQRKSVRFSDTVQDTPE 3202

Query: 159  RCAIRSTD-PSFKRPA 115
            +CA RS D PS KR A
Sbjct: 3203 KCAARSKDGPSAKRSA 3218


>SB_7076| Best HMM Match : IncA (HMM E-Value=0.74)
          Length = 282

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 269 LPVDWTHSTAERVTLCLTWLTENRPVKCPTPRNAHRS 159
           +P+  T S++E V+    W+ ++R  +CP P NA+RS
Sbjct: 59  IPICVTASSSEFVSSIRIWIRDDRGRRCPPPANAYRS 95


>SB_14157| Best HMM Match : IncA (HMM E-Value=0.2)
          Length = 556

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 266 PVDWTHSTAERVTLCLTWLTENRPVKCPTPRNAHRS 159
           P+    S +E V+    W+ E+R  +CP P NA+RS
Sbjct: 187 PICVAASFSEFVSSIRIWIREDRGRRCPPPANAYRS 222


>SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4)
          Length = 293

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 266 PVDWTHSTAERVTLCLTWLTENRPVKCPTPRNAHRS 159
           P+    S +E V+    W+ E+R  +CP P NA+RS
Sbjct: 129 PICVAASFSEFVSSIRIWIREDRGRRCPPPANAYRS 164


>SB_27705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -2

Query: 483 RRTAVNVRPTLTLTNQNLHFRHHLTICT-LDKSHLR-LHL*GYGSGGRGPKSPHVTSR 316
           + +A+ +RP L  ++  L        C  L++  ++ L + GYG+GG   K+ H+T+R
Sbjct: 4   KSSAITIRPDLHASSHELPSTTSTNNCPQLNQEQIQHLEILGYGNGGTVYKAIHLTTR 61


>SB_42528| Best HMM Match : Pkinase (HMM E-Value=1.3e-13)
          Length = 255

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -2

Query: 483 RRTAVNVRPTLTLTNQNLHFRHHLTICT-LDKSHLR-LHL*GYGSGGRGPKSPHVTSR 316
           + +A+ +RP L  ++  L        C  L++  ++ L + GYG+GG   K+ H+T+R
Sbjct: 4   KSSAITIRPDLHASSHELPSTTSTNNCPQLNQEQIQHLEILGYGNGGTVYKAIHLTTR 61


>SB_33770| Best HMM Match : Troponin (HMM E-Value=8.9)
          Length = 133

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 353 EAAAPRVRTLRPATTRLRITVYYGMLRLLPVDWTHSTAERVTLCLTWLTENRPVKCP 183
           E   P+V  L+    R  + +   M R +     H  AER+   +  L EN+P   P
Sbjct: 72  EKLKPQVHRLKMKIYRYHMRILKNMYREMKKHKLHEFAERILSAINHLKENKPKYLP 128


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 31  KERIQQNSHERHDAARPHR-SAGRQLTPRRRP 123
           K  +Q  SH R  +  P R S  R  +PRRRP
Sbjct: 452 KSDLQSRSHSRSRSPSPRRRSRSRSRSPRRRP 483


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 147 RSTDPSFKRPAARRQLPAGRTVRARGIVP 61
           R+T P+     AR   PAGR   ARG+ P
Sbjct: 512 RTTSPARITSPARASSPAGRASPARGVSP 540


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +2

Query: 2    KELTYQNGSLKNGFNKIHTNGTMPRARTVLPAGN*RRAAGLLKLGSVDRIAQRCGVRCAV 181
            K   +Q  +L +G  K H++G  P  +   P+   R+A    K     R     GVR A 
Sbjct: 821  KRSLHQRKTLSSGVRKAHSSGKRPLHQRKTPSSGVRKAHSSGKRSLHQRKTPSSGVRKAH 880

Query: 182  S 184
            S
Sbjct: 881  S 881


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 504 ATIQTDRRRTAVNVRPTLTLTNQNLHFRHHLT 409
           A +  D R+     +P LTL +QNLH  +++T
Sbjct: 789 APVHIDNRKLTQE-QPPLTLPSQNLHINYNIT 819


>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
          Length = 1523

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 296 TVYYGMLRLLPVDWTHSTAERVTLCLTW 213
           T Y+ + RL P  W ++TAE++    +W
Sbjct: 859 TAYHNLSRLCPRPWRYNTAEQLGFHDSW 886


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,330
Number of Sequences: 59808
Number of extensions: 364226
Number of successful extensions: 1614
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)