Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0086.Seq
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      32   0.22 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    32   0.22 
Z19555-6|CAJ15163.1|  187|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    28   4.8  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    28   4.8  
AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical ...    27   6.3  

>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = -3

Query: 353 EAAAPRVRTLRPATTRLRITVYYGMLRLLPVDWTHSTAERVTLCLTWLTENRPVKCPTPR 174
           E   PR+ TLR  TT   +  Y   +    + W   TA+ VTL L W+ E   +    P+
Sbjct: 505 EENEPRISTLRILTTHYILLQYLQHIDEKIILWR--TADSVTLLLRWIKEYTQLNAENPQ 562

Query: 173 NAHRSVVRSDRQTLA 129
               S +     T+A
Sbjct: 563 AKCASYINKITLTMA 577


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = -3

Query: 353 EAAAPRVRTLRPATTRLRITVYYGMLRLLPVDWTHSTAERVTLCLTWLTENRPVKCPTPR 174
           E   PR+ TLR  TT   +  Y   +    + W   TA+ VTL L W+ E   +    P+
Sbjct: 505 EENEPRISTLRILTTHYILLQYLQHIDEKIILWR--TADSVTLLLRWIKEYTQLNAENPQ 562

Query: 173 NAHRSVVRSDRQTLA 129
               S +     T+A
Sbjct: 563 AKCASYINKITLTMA 577


>Z19555-6|CAJ15163.1|  187|Caenorhabditis elegans Hypothetical
           protein F02A9.7 protein.
          Length = 187

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 330 HVTSRDNQVTNHSLLRNAKTFTRRLDAQYCRTRYAVSH 217
           HVT RDN++  +S++ N    +R  D    R  + + +
Sbjct: 30  HVTFRDNEMQYYSIMENTAQISRHFDVPVERVEFQIDN 67


>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 4    RADLPERFAKERIQQNSHERHDAARPHRSAGRQLTPRRRP 123
            RA +P R  K   Q  + +  D   P RS  RQL P   P
Sbjct: 1199 RARMPSRVLKTPRQVKTFQEEDDEAPKRSTTRQLKPLVAP 1238


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein 1
            protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 4    RADLPERFAKERIQQNSHERHDAARPHRSAGRQLTPRRRP 123
            RA +P R  K   Q  + +  D   P RS  RQL P   P
Sbjct: 1199 RARMPSRVLKTPRQVKTFQEEDDEAPKRSTTRQLKPLVAP 1238


>AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical
           protein T27C4.2 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 364 LRKRRPRPQESA-RYVPRQ-PGYESQSTTEC*DFYPSIGRTVLQ 239
           L K+R RP+    + +P Q    +S  T +C D  P IG TVL+
Sbjct: 122 LSKKRKRPKFGVIQVIPFQCSSCKSSQTNDCADCGPIIGSTVLE 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,991,182
Number of Sequences: 27780
Number of extensions: 249785
Number of successful extensions: 721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)