Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0082.Seq
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    26   0.22 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.8  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   4.8  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 563 RKRHCRHHRWRNLDTPCRKRE*FPFFDHLG 474
           +++  R HR +NL  PCR+R+ +  F  +G
Sbjct: 256 KRQSSRRHR-KNLKDPCRRRQMYVDFGSVG 284


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 227 KHYAKAKEICSRRLLGETTRKSATPS 304
           K  AK K++ S       ++KSATPS
Sbjct: 205 KSSAKRKQLVSEHPDSPNSKKSATPS 230


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 128 KQV*LQHQYMWPHH 87
           ++V LQH + +PHH
Sbjct: 123 EEVKLQHLHQFPHH 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,650
Number of Sequences: 336
Number of extensions: 3947
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)