Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0082.Seq
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    93   3e-20
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    63   3e-11
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   1.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   1.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   1.7  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   1.7  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    27   2.9  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    26   5.1  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   6.8  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   6.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 1/209 (0%)
 Frame = +2

Query: 2   GKPFVLPSVRKAEEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQT 181
           GKP+VLPSVR+AE  L S+ L+ EYAPI+G  ++     KLA+G+    IK+R   + Q+
Sbjct: 79  GKPYVLPSVRQAETELLSQKLDKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQS 137

Query: 182 LSGTGALRLGLEFITKHYAKAKEICSRRLLGETTRK-SATPSTCRTRNTVTSIPRPMVSI 358
           +SGTGAL +   F+   Y       S    G      S    T ++        R +  I
Sbjct: 138 ISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGL-DI 196

Query: 359 CREHSRIYQKFPKFHYSVARVRTQPHRC*PQAQRLGTTFQGDQRKEIIPVFDMAYQGFAN 538
               S +          +      P    P   +     +  Q+K    + DMAYQGFA+
Sbjct: 197 KGMLSDLTSAPDGSIILLHACAHNPTGVDPTKAQWDDILKTMQKKNHFALLDMAYQGFAS 256

Query: 539 GDVDNDAFAVRLFVKEGHQVMLAQNFAKN 625
           GD   DA+A RLF      ++L Q+FAKN
Sbjct: 257 GDFARDAYATRLFASSNVPMLLCQSFAKN 285



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 24/79 (30%), Positives = 41/79 (51%)
 Frame = +1

Query: 265 PTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEVPLFCCTRAHTTPPVL 444
           PTWGNH  + +   L  K Y+Y+DP T G D++G L D++  P+  +         P  +
Sbjct: 165 PTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHACAHNPTGV 224

Query: 445 TPSPATGNNFPR*SKKGNY 501
            P+ A  ++  +  +K N+
Sbjct: 225 DPTKAQWDDILKTMQKKNH 243



 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +3

Query: 399 SIILLHACAHNPTGVDPKPSDWEQLSKVIKERKLF 503
           SIILLHACAHNPTGVDP  + W+ + K ++++  F
Sbjct: 210 SIILLHACAHNPTGVDPTKAQWDDILKTMQKKNHF 244


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +2

Query: 2   GKPFVLPSVRKAEEILHSRG-LNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQ 178
           GKP++LP+V+KA +I+  +   NHEY PI+G   +T A A++ F  +  ++      ++Q
Sbjct: 45  GKPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQ 104

Query: 179 TLSGTGALRLGLEFITKHYAK 241
           ++SGTGA  L   FI   Y K
Sbjct: 105 SVSGTGANFLAASFIETFYVK 125



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +2

Query: 488 RKEIIPVFDMAYQGFANGDVDNDAFAVRLFVKEGHQVMLAQNFAKN 625
           RK ++ VFD+AYQGFA+GD++ D++A+  FVK      + Q+FAKN
Sbjct: 212 RKHLV-VFDIAYQGFASGDLNRDSWALNEFVKYNKDFFVCQSFAKN 256



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +3

Query: 324 PLLRSQDQWFRFAGSTRGYIKNSRSSIILLHACAHNPTGVDPKPSDWEQLSKVIKERK 497
           P   ++++ F + G           SI LLHACAHNPTG+DP    W  + + +  RK
Sbjct: 156 PYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSRK 213



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +1

Query: 256 LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEVPLFCCTRAHTTP 435
           +  PTW  H  +   L +    Y Y+D K   FD +G L  I   PE  +F        P
Sbjct: 133 ISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAHNP 192

Query: 436 PVLTPS 453
             + P+
Sbjct: 193 TGIDPT 198


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 375 GYIKNSRSSIILLHACAHNPTG-VDPKPSDWEQLSKVIKERKLFPF 509
           G+I  +  +++L  AC  N T  VD +P D E+  ++I+   +F F
Sbjct: 13  GFIGTTVDALLLFEACRQNYTHFVDRRPQDRER-ERLIRSGSVFVF 57


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 455 GLGVNTGGVVCARVQQNN--GTSGIFDISSSAP 363
           G+  N G V   R + +   GTSG +D+SS++P
Sbjct: 423 GMSNNFGSVPLGRTESSPAWGTSGYYDVSSTSP 455


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 469 CSQSLGLGSTPVGLCAHACNRIMELREF 386
           C  SLG+GS   G+C  A  +  +L  F
Sbjct: 406 CQDSLGMGSCASGVCTSASRQCKKLTNF 433


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 337 PKTNGFDLQGALEDISKIPEVPLFCCTRAHTTPPVLTPSPAT 462
           P+T  FDLQG     S + EV        H    ++TP P+T
Sbjct: 76  PRTKNFDLQGNGGQNSALKEVNTPAYQSMHHFEHLITPLPST 117


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 571 TDCESVIVDITVGETLIRHVENGNNFLSLITLE 473
           T    ++V++  GET   H+EN +N+++L   E
Sbjct: 10  TQGRPILVELKNGETFNGHLENCDNYMNLTLRE 42


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 250 DLLPTPTWGNHPQ 288
           D+LPT TWG  PQ
Sbjct: 295 DVLPTVTWGTSPQ 307


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 317 RNTVTSIPRPMVSICREHSRIYQKFPKFHYSVARVRTQPHRC*PQAQ 457
           +N  TSI  P  +  +E   +  +  K+   + +V T P  C P  Q
Sbjct: 593 KNEETSINIPNETAVKEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQ 639


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 199 TPTRTRVHNETLR*GKGDLLPTPTWGNHPQICNTLNLPHKKYRYFDPKT 345
           TP+ +     T     G L  T T  + P + NT+ +P+    Y  P T
Sbjct: 744 TPSVSATTTTTTIGYSGSLTTTLTGSSGPVVTNTVEIPYGNSSYIIPTT 792


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 228 FVMNSSPSRSAPVPDNVCTVQLLLFLMTGL 139
           F  NSSP+RS P    +  ++LLL   T +
Sbjct: 208 FHRNSSPNRSLPRSRKIDLLKLLLIFSTSI 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,613
Number of Sequences: 5004
Number of extensions: 63821
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)