Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0082.Seq
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 77 9e-15
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 64 1e-10
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 63 2e-10
11_06_0588 + 25272067-25274850 31 0.57
10_08_0645 - 19562886-19564484 30 1.3
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 30 1.3
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 30 1.7
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 29 3.0
01_06_1021 - 33883594-33884583 29 3.0
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 4.0
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 4.0
01_06_0324 - 28485196-28486098 29 4.0
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 5.3
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 27 9.2
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 27 9.2
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 27 9.2
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 27 9.2
01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321... 27 9.2
01_06_0248 + 27862048-27864310,27864331-27864776 27 9.2
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 77.4 bits (182), Expect = 9e-15
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +2
Query: 2 GKPFVLPSVRKAEEIL-HSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQ 178
GKP VL VR+AE++L ++ EY PI+G A + AKL FG DSP I+ TVQ
Sbjct: 46 GKPLVLNVVRRAEQMLINNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQ 105
Query: 179 TLSGTGALRLGLEFITKHY 235
LSGTG+LR+G EF+ +HY
Sbjct: 106 CLSGTGSLRVGGEFLARHY 124
Score = 62.1 bits (144), Expect = 4e-10
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 256 LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIP 393
+P PTWGNHP++ L + YRY+DP T G D QG LED+ P
Sbjct: 131 IPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAP 176
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = +2
Query: 491 KEIIPVFDMAYQGFANGDVDNDAFAVRLFVKEGHQVMLAQNFAKN 625
K ++P FD AYQGFA+G +D DA +VR+FV +G ++++AQ++AKN
Sbjct: 210 KALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGELLMAQSYAKN 254
Score = 56.8 bits (131), Expect = 1e-08
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +3
Query: 399 SIILLHACAHNPTGVDPKPSDWEQLSKVIKERKLFPF 509
+I+LLHACAHNPTGVDP WEQ+ ++++ + L PF
Sbjct: 179 AIVLLHACAHNPTGVDPTLDQWEQIRQLMRSKALLPF 215
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = +2
Query: 491 KEIIPVFDMAYQGFANGDVDNDAFAVRLFVKEGHQVMLAQNFAKN 625
K+ P FDMAYQGFA+GD + DA A+R+F+++GHQ+ AQ++AKN
Sbjct: 234 KKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIGCAQSYAKN 278
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/73 (43%), Positives = 43/73 (58%)
Frame = +2
Query: 2 GKPFVLPSVRKAEEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQT 181
GKP VL VR+AE + + +N EY P+ G + KLA+GE+ IK++ VQ
Sbjct: 72 GKPVVLECVREAERRI-AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQA 130
Query: 182 LSGTGALRLGLEF 220
LSGTGA RL +F
Sbjct: 131 LSGTGACRLFADF 143
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 381 IKNSRS-SIILLHACAHNPTGVDPKPSDWEQLSKVIKERKLFPF 509
IKN+ S LLHACAHNPTGVDP W ++S K +K FPF
Sbjct: 196 IKNAPDGSFFLLHACAHNPTGVDPSEEQWREISHQFKVKKHFPF 239
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 256 LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEVPLFCCTRAHTTP 435
+PTPTW NH I +P K + Y+ P++ G D G ++DI P+ F P
Sbjct: 155 IPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHACAHNP 214
Query: 436 PVLTPS 453
+ PS
Sbjct: 215 TGVDPS 220
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/45 (57%), Positives = 36/45 (80%)
Frame = +2
Query: 491 KEIIPVFDMAYQGFANGDVDNDAFAVRLFVKEGHQVMLAQNFAKN 625
K P FDMAYQGFA+GD + DA A+R+F+++GHQ+ AQ++AKN
Sbjct: 171 KNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIGCAQSYAKN 215
Score = 54.4 bits (125), Expect = 7e-08
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +3
Query: 243 QRRSAPDA--YLGKPPANLQH-----PQLAAQEIPLLRSQDQWFRFAGSTRGYIKNS-RS 398
QRR P++ Y+ P + H Q+ + + + FAG IKN+
Sbjct: 81 QRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDD-IKNAPNG 139
Query: 399 SIILLHACAHNPTGVDPKPSDWEQLSKVIKERKLFPF 509
S LLHACAHNPTGVDP W ++S K + FPF
Sbjct: 140 SFFLLHACAHNPTGVDPTEEQWREISYQFKIKNHFPF 176
>11_06_0588 + 25272067-25274850
Length = 927
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 473 KLFPVAGLGVNTGGVVCARVQQNNGTSGIFD 381
+L P+ G+GV G ++ RV Q++ + +FD
Sbjct: 209 RLIPIVGVGVEAGKIIAERVYQDSSVAILFD 239
>10_08_0645 - 19562886-19564484
Length = 532
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 454 GLGSTPVGLCAHACNRIMELREFLIYPRVLPANRNHWSW 338
G G VGL A+A ++ LR L Y V A R W W
Sbjct: 9 GGGGGVVGLVAYAALAVVALRVVLSYKSVAHAVRRMWRW 47
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +2
Query: 119 KLAFGEDSPVIKNRSN-----CTVQTLSGTGALRLGLEFITKHYAKAKEIC 256
KLA G ++N +N C + GTG RL + F+ ++A E C
Sbjct: 896 KLAGGTSIEQLRNNANTIEGGCVISHAPGTGKTRLAITFVQSYFAFFPECC 946
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 520 RHVENGNNFLSLITLESCSQSLGLGSTPVGLCAH---ACNRIMELREFLIYPRV 368
+HV NN LS T+ +QS L S PV + H A N++ + + +P V
Sbjct: 922 QHVAPMNNLLSRATVHQHTQSYALTSDPVAVAVHHQPAVNKLAHEVQSISHPAV 975
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 327 LLRSQDQWFRFAGSTRGYIKNSRSSIILLHACAHNPTGVDPKPSD-WEQLSKVIKERKL 500
LL + W G+ ++ S S L C+H+P + +P+ W++L +V+K ++
Sbjct: 468 LLLLFNNWLSLIGNRTLTLEQSPRSYSQLILCSHHPCISNSRPAAVWKRLQRVLKHHQI 526
>01_06_1021 - 33883594-33884583
Length = 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 165 LLLFLMTGLSSPKASLATASVYVASP--LMGAYSWLSPLL*RISSAFL 28
+LLF ++ LS+ A AS+Y A P + + + L P+L R+ FL
Sbjct: 87 ILLFTLSLLSTAAAVFTVASLYAAKPASIASSLAALPPILPRLLRTFL 134
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 273 GKPPANLQHPQLAAQEIPLLRSQDQWFRFAGS 368
G PP + +L +E PL+RS+ WFRFA S
Sbjct: 1765 GCPPIIKEEMKLN-EEPPLIRSKYGWFRFAAS 1795
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 274 GNHPQICNTLNLPHKKYRYFDPK 342
GN Q C T +P KY+ DPK
Sbjct: 186 GNWSQFCKTFEVPVVKYQQMDPK 208
>01_06_0324 - 28485196-28486098
Length = 300
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 274 GNHPQICNTLNLPHKKYRYFDPK 342
GN Q C T +P KY+ DPK
Sbjct: 189 GNWSQFCKTFEVPVVKYQQMDPK 211
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 410 VARVRTQPHRC*PQAQRLGTTFQGDQRKEIIPVFD 514
V R+R QPHRC Q L GD KE+I VF+
Sbjct: 799 VPRIRAQPHRC-EVIQHL-----GDMCKELIGVFE 827
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 345 QWFRFAGSTRGYIKNSRSSIILLHACAHNPTGVDPKPSDWEQLSKVIKERKLFPFS 512
QW G KN +S+IIL C HN +D K +D++ + + + P +
Sbjct: 659 QWKILKGIPYNPYKNVQSNIILAAFCLHN-FRIDSKQNDFQANNPLYNGNPIAPMA 713
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 345 QWFRFAGSTRGYIKNSRSSIILLHACAHNPTGVDPKPSDWEQLSKVIKERKLFPFS 512
QW G KN +S IIL C HN +D K +D++ + + + P +
Sbjct: 693 QWKILKGIPYNPYKNVQSDIILAAFCLHN-FRIDSKQNDYQANNPLYNGNPIAPMA 747
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +3
Query: 258 PDAYLGKPPANLQHPQLAAQEIPLLRSQDQWFRFAGSTRGYIKNSRSS 401
P Y+ HP + L QWF F+ R Y SR+S
Sbjct: 468 PTPYIADVDVYKSHPSHLPERSALRTGDKQWFFFSRMDRKYPNGSRAS 515
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 5 KPFVLPSVRKAEEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVI 151
KP L ++ K E+LH G YA + A+ +L+ G VI
Sbjct: 233 KPIKLGTIAKGAELLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVI 281
>01_07_0047 +
40731508-40731714,40731834-40731893,40731992-40732159,
40732198-40732203,40732898-40732961,40733395-40733690,
40733799-40733903,40734030-40734066,40734309-40734403,
40735226-40735282,40735361-40735438,40735527-40735586
Length = 410
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 11 FVLPSVRKAEEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDS 142
+V S ++ EILH RG+ E + +AT +D A+ F E +
Sbjct: 97 YVERSAKQTTEILHRRGMELEAQVEAMKATISDLEAEAKFFEST 140
>01_06_0248 + 27862048-27864310,27864331-27864776
Length = 902
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = +1
Query: 268 TWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEVPLFCCTRAHTTPPVLT 447
T G H I + LNLP YF + G L A +D F A TT P +T
Sbjct: 46 TAGEHQSIADRLNLPLPSDGYF---SGGDKLLFASDDHRLPRSFSFFTRRAARTTDPAIT 102
Query: 448 PSPAT 462
AT
Sbjct: 103 HLVAT 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,066,518
Number of Sequences: 37544
Number of extensions: 449488
Number of successful extensions: 1390
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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