Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0081.Seq
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    30   0.26 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.61 
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   1.1  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.9  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 457 IDLFRDKKLEQSYFANNDVNVHERFKLYNNPIEGKRQNIVHPHEKL 320
           ++ FR      + FA N  NVHE  +L N P+  K  N + P E L
Sbjct: 610 LECFRIFVYRSALFAFNKSNVHEIIQLLNEPV--KYHNFLKPSEAL 653


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 432 LNNLISLTMTSMFTSALSYITIPLRERDKTSS---IPTKNFKRQNLEKNVTDSNYFFIIC 262
           LN+LIS +M     S +S + IPL+  D  S        NF+  +  KN+     +   C
Sbjct: 311 LNHLISYSMHHFIPSFISLLKIPLKTNDAFSKKLITMLSNFREGDSAKNIPTHKLWCTYC 370


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 468 TSKISICLEIRNLNNLISLTMTSMFTSALSYITIPLRERDKTSSIPTKNFKRQNLEKNVT 289
           TS  S+ L    L+N+ +  +    TSA+   +IP R     S+     FK   L  +++
Sbjct: 600 TSANSVILRTDALSNVATTRLKRKLTSAIIDCSIPRRRLRHYSNPEIAEFKNFRLSTDIS 659

Query: 288 DSN 280
            SN
Sbjct: 660 HSN 662


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 343 IVHPHEKLQTPKSRKKC 293
           ++HPHE L+ P + K C
Sbjct: 168 LLHPHEVLEMPAAWKNC 184


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 277 IIRVCYIFFEILAF 318
           +I +CYIFF +L+F
Sbjct: 212 VIFICYIFFTVLSF 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,972
Number of Sequences: 5004
Number of extensions: 47831
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)