Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0081.Seq
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649...    32   0.48 
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290...    30   1.5  
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019...    29   4.5  

>06_03_0577 +
           22461831-22462023,22462378-22463160,22463380-22464936,
           22465082-22465449
          Length = 966

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
 Frame = -2

Query: 450 CLEIRNL-NNLISLTMTSMFTSALSYITIPLRERDKTSSIPTKNFKRQNLE-----KNVT 289
           CLE+ NL NN ++ ++ S   +  + I I + +   T SIP +    QNL+     KN  
Sbjct: 77  CLELLNLYNNNLTGSIPSYIGNLKNLILIDISDNGLTGSIPPEIGNLQNLQFMDFGKNKL 136

Query: 288 DSNYFFIICNKPISVNYLFIEDNCILSCIVESL*FT*YFYTSILKHIQL 142
             +    + N   S+N+L + +N ++  I  SL    Y  T IL   +L
Sbjct: 137 SGSIPASLGNL-FSLNWLDLGNNSLVGTIPPSLGGLPYLSTFILARNKL 184


>08_01_0322 -
           2898272-2898475,2898548-2898730,2898817-2899702,
           2902070-2902374
          Length = 525

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 363 LRERDKTSSIPTKNFKRQNLEKNVTDSNYFFIICNKPISVNYLFIED 223
           LR   +  +I  K+F+  NL+ +   S++  I+C   +S++ LFIE+
Sbjct: 233 LRSNVREINIQEKHFEYSNLDHSSFISSHLKILCLNYVSISDLFIEN 279


>05_03_0418 +
           13700855-13700942,13701602-13701728,13701845-13701916,
           13702079-13702153,13702290-13702361,13702477-13702638,
           13702726-13702800,13702880-13702951,13703040-13703108,
           13703196-13703264,13703355-13703429,13703522-13703593,
           13703668-13703737,13703920-13704361,13704442-13704573,
           13704664-13704803,13704910-13705129,13705301-13705536,
           13705732-13706256
          Length = 930

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 429 NNLISLTMTSMFTSALSYITIPLRERDKTSSIPTKNFKRQNLEKNVTDSN 280
           N+ I   + S FTS +  +T+ ++    +  +P K F   NL+  V   N
Sbjct: 299 NSFIPSEVPSWFTSLIKLMTLKMQSVGLSGQLPQKLFSNPNLQYVVLSDN 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,503
Number of Sequences: 37544
Number of extensions: 226731
Number of successful extensions: 435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)