Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0081.Seq
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical ... 30 1.3
Z81536-5|CAB04366.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.0
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 29 4.0
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 29 4.0
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 29 4.0
AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical ... 28 5.3
Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical pr... 28 6.9
>AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical
protein F55A3.2 protein.
Length = 786
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 451 LFRDKKLEQSYFANNDVNVHERF-KLYNNPIEGKRQNIVHPHEKLQTPKSR 302
L R+K+ Q F + + H + K+ + I KR+N + PHEK++ + R
Sbjct: 636 LLREKERSQIQFLDGGLAGHPTYRKISSVVISKKRKNHIVPHEKIRKKQKR 686
>Z81536-5|CAB04366.1| 297|Caenorhabditis elegans Hypothetical
protein F40D4.6 protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = -2
Query: 441 IRNLNNLISLTMTSMFTSALSYITIPLRERDKTSSIPTKNFKRQNLEKNVTDSNYFFIIC 262
I + ++SLT++ + + P++ R+ IPT L V + ++IC
Sbjct: 96 IGTMRGIVSLTIS---VERVMAVCAPIKYRNYRPMIPTNAILTLILGYGVFEYFILYVIC 152
Query: 261 NKPISVNYLFIEDNCI-LSCIVESL*FT*YFYTS 163
N +++ Y NC+ + C + S + YF +S
Sbjct: 153 NYKLNIPY-----NCVNIGCAINSC-YRQYFLSS 180
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/92 (23%), Positives = 48/92 (52%)
Frame = +2
Query: 134 TNFSCICFNIDV*KYYVNYNDSTIQERMQLSSIKR*LTDIGLLHIMKK*LESVTFFSRFW 313
TNF+ +C+ +V N N+ ++ +++ R L +GL + + +++ FS F
Sbjct: 135 TNFT-MCYTDEVIYIMQNLNNESLTIAQEVARNARKLEFVGLGLSLVSLILAISIFSYFR 193
Query: 314 RLKFFVGMDDVLSLSLNGIVI*LKALVNIDVI 409
RL+ F + + + +V+ L+ ++ ID+I
Sbjct: 194 RLRVFRNLLHLHLMIAMLMVVILRLVLYIDLI 225
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/92 (23%), Positives = 48/92 (52%)
Frame = +2
Query: 134 TNFSCICFNIDV*KYYVNYNDSTIQERMQLSSIKR*LTDIGLLHIMKK*LESVTFFSRFW 313
TNF+ +C+ +V N N+ ++ +++ R L +GL + + +++ FS F
Sbjct: 135 TNFT-MCYTDEVIYIMQNLNNESLTIAQEVARNARKLEFVGLGLSLVSLILAISIFSYFR 193
Query: 314 RLKFFVGMDDVLSLSLNGIVI*LKALVNIDVI 409
RL+ F + + + +V+ L+ ++ ID+I
Sbjct: 194 RLRVFRNLLHLHLMIAMLMVVILRLVLYIDLI 225
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/92 (23%), Positives = 48/92 (52%)
Frame = +2
Query: 134 TNFSCICFNIDV*KYYVNYNDSTIQERMQLSSIKR*LTDIGLLHIMKK*LESVTFFSRFW 313
TNF+ +C+ +V N N+ ++ +++ R L +GL + + +++ FS F
Sbjct: 135 TNFT-MCYTDEVIYIMQNLNNESLTIAQEVARNARKLEFVGLGLSLVSLILAISIFSYFR 193
Query: 314 RLKFFVGMDDVLSLSLNGIVI*LKALVNIDVI 409
RL+ F + + + +V+ L+ ++ ID+I
Sbjct: 194 RLRVFRNLLHLHLMIAMLMVVILRLVLYIDLI 225
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/92 (23%), Positives = 48/92 (52%)
Frame = +2
Query: 134 TNFSCICFNIDV*KYYVNYNDSTIQERMQLSSIKR*LTDIGLLHIMKK*LESVTFFSRFW 313
TNF+ +C+ +V N N+ ++ +++ R L +GL + + +++ FS F
Sbjct: 135 TNFT-MCYTDEVIYIMQNLNNESLTIAQEVARNARKLEFVGLGLSLVSLILAISIFSYFR 193
Query: 314 RLKFFVGMDDVLSLSLNGIVI*LKALVNIDVI 409
RL+ F + + + +V+ L+ ++ ID+I
Sbjct: 194 RLRVFRNLLHLHLMIAMLMVVILRLVLYIDLI 225
>AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical
protein F57H12.4 protein.
Length = 454
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -2
Query: 324 NFKRQNLEKNVTDS----NYFFIICNKPISVNYL 235
N KR++ E+ VT FIICN P +NYL
Sbjct: 271 NTKREDAERKVTVMATVMTMIFIICNIPPGINYL 304
>Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical
protein T07C5.2 protein.
Length = 334
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +1
Query: 364 WDCYIT*SAREH*---RHC*RNKIVQVSYL*TDRY 459
WDCY S R+ RHC NK V V L RY
Sbjct: 48 WDCYKESSNRQRLPKCRHCRFNKCVDVGLLTVSRY 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,974,913
Number of Sequences: 27780
Number of extensions: 252110
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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