Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0081.Seq
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.1  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
 Frame = -3

Query: 638 IYLSEQFTTLY----RNQTNLALTLGFVTSKM 555
           +Y +EQ +T++    R Q  + LTLG+VT ++
Sbjct: 64  VYNTEQQSTVFVAIPRIQDGVPLTLGYVTREV 95


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 447 LEIRNLNNLISLTMTSMFTSALSYITIPLRERDKTSSIPT 328
           ++ R    L     T+   + + Y    +R+R+KTS+ PT
Sbjct: 293 IDQRIQKGLFLFACTNSCMNPIVYGAFNIRDRNKTSARPT 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,853
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)