Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0080.Seq
         (514 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   3.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.4  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 188 ALNHAESKINEDKLQKIDDD 247
           ++NH   KI++++ + +DDD
Sbjct: 271 SMNHKYEKIDKEEHESMDDD 290


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 131 VLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDDKNAHQTRVMRVLSPTV 295
           V+ +T Q       L  +D+    E  I +   QKID + ++  T    VLS  +
Sbjct: 43  VVKQTKQSVLDEARLRANDSSVDPEIDIEDKPAQKIDGEDDSGLTEEEVVLSNAI 97


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 135 YLRRASRHLHDPVSSKTTHSTMPS 206
           Y+  A   +H PV+   T + MPS
Sbjct: 257 YILIAKTLMHHPVAMTGTKTVMPS 280


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 330 SNRFKFVVLFSRTVGLRTLITRVW*AFLSSSIFCNLSSFIL 208
           S  F  V L  R    R   T+ +   +++ ++C+L+ F+L
Sbjct: 383 SEIFGLVNLKYRETYFRLSKTKTFCTLVTALVYCSLAIFVL 423


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,321
Number of Sequences: 336
Number of extensions: 2156
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)