Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0080.Seq
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    31   0.13 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   0.71 
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   1.2  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    26   3.8  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   3.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   6.7  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   6.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.8  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +2

Query: 53   DALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQ 232
            D  V+DE   L   +A + +   L   + E  +P   + S FK+    H ++KI +++L 
Sbjct: 801  DTFVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKE----HFQNKIYQEQLD 856

Query: 233  KIDDDKNAHQTR 268
            K++  K  ++++
Sbjct: 857  KLNFQKYLNESK 868


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 161 SRPSLFKDDALNHAES--KINEDKLQKIDDDKNAHQTRVMRVLSPTVLLKRTTNLKRL 328
           ++PSL   + L+H +S       KL +I  D NA      +  SP   +    N+K L
Sbjct: 238 TQPSLVNTEQLSHQQSISSTKSSKLDEISADNNAQSAVDNKYSSPPQTIDPQANIKAL 295


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 86  ANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKI 238
           + A  ++ +PP  SSV   T+ P+S   S+  D  LN  E+ + E K  +I
Sbjct: 77  SEAPRINEIPPSTSSVEKSTTIPNS---SVVLDHLLNEGENTLEEVKPSEI 124


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 331 PMFKLPIQFDLDELAGAFLANNQKG--RMNCVVERRNDDPLERRFP 462
           P  K  +  + +E+ G+F A N+    ++  ++ + ++DPL +R P
Sbjct: 52  PKLKAEVVLESEEV-GSFDAQNESRDEKLKYLIAKNSEDPLRKRLP 96


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 101 LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN---HAESKINEDKLQKIDDDKNAH 259
           ++G PP  S+   + S+P+SS  +  K+   +    AE+++ E +  +  ++K AH
Sbjct: 115 INGKPPSNSNSTEDASKPTSSDTASVKETENSDPKSAENEVLEGETTQHSNNKEAH 170


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 11   LDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSV--LPETSQPSSSRPSLFKD 184
            L  EL   G        ++ + L L  AH   G+P   SS+  + +   PS S      D
Sbjct: 1141 LSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTD 1200

Query: 185  DALNHAESKIN 217
            D L   ESK N
Sbjct: 1201 DILG-VESKTN 1210


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 123 CLQCYLRRASRHLHDPVSSKTTHS 194
           C QCYL    +++H+ + +K+T +
Sbjct: 292 CYQCYLISVGQNVHEYLRAKSTET 315


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 191 LNHAESKINEDKLQKIDDD 247
           +NH E+KI   +L K+DD+
Sbjct: 840 INHLENKIASARLLKLDDE 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,302
Number of Sequences: 5004
Number of extensions: 35336
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)