Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0080.Seq
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225...    31   0.72 
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   1.7  
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068...    27   6.7  
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    27   6.7  
03_03_0022 - 13834090-13834128,13835217-13835282,13835364-138354...    27   6.7  
01_07_0284 - 42472309-42472359,42472778-42472864,42473384-424734...    27   6.7  
09_02_0561 + 10681056-10682285,10682546-10682764                       27   8.8  

>05_07_0257 +
           28719980-28720220,28721412-28721455,28722521-28722590,
           28722693-28722816,28723420-28724060,28725100-28725364,
           28725434-28725713,28726042-28726209,28726867-28727358,
           28727432-28727689
          Length = 860

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 68  DEPLPLANAHALHGVPPMLSSVLPE---TSQPSSSRPSLFKDDALNHAESKINEDKLQKI 238
           +E  P +N  ++  +PP     +PE   T +P SS   ++KD+     +S  N+D     
Sbjct: 265 NEVSPASNDSSIDVLPPREGLEVPESVATVKPGSSTADVYKDEVEEDMDSDKNKDMSASN 324

Query: 239 DDDKNA 256
            DD+ +
Sbjct: 325 ADDRTS 330


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 74   PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 196
            P P A +H   H  P +L+S+LP    PSSS PSL    +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562


>06_03_1205 -
           28406183-28406218,28406462-28406548,28406769-28406830,
           28407968-28408184,28408793-28408957,28409145-28409250,
           28409830-28410071,28410493-28410605,28410848-28411043,
           28411681-28411827,28412034-28412218,28412478-28412592,
           28413237-28413728
          Length = 720

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 203 ESKINEDKLQKIDDDKNAHQTRVMRVLSPTVLL 301
           E ++N+ KLQ+  D+   H +RV+ VLS  V L
Sbjct: 332 EGQLNKPKLQRWLDEFGEHYSRVVVVLSLVVAL 364


>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 120 CCLQCYLRRASRHLHDPVSSKTTHSTMPS 206
           C LQC+++RAS  +H P + K   S +P+
Sbjct: 252 CELQCHIQRASESMH-PFAPKNILSHLPN 279


>03_03_0022 -
           13834090-13834128,13835217-13835282,13835364-13835461,
           13836340-13836493,13836742-13836798,13836906-13837028
          Length = 178

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 141 RRASRHLHDPVSSKTTHSTMPSP 209
           RR +  LHD  SS ++HS++P P
Sbjct: 9   RRWAVELHDASSSSSSHSSIPDP 31


>01_07_0284 -
           42472309-42472359,42472778-42472864,42473384-42473449,
           42474608-42474712,42475129-42475200,42475421-42475543
          Length = 167

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = +2

Query: 143 TSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDDKNAHQTRVMRVLSPTVLLKRTTNLK 322
           T++  +++P  + DDAL   +     DKL KI  D +  +T+++   +   +L R   L 
Sbjct: 80  TAKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLD--ETKIILHKTIDSVLSRGERLD 137

Query: 323 RLDRCSNCLFSLTLMSWR 376
            L   S+ L + + M ++
Sbjct: 138 SLVEKSSDLSAASQMFYK 155


>09_02_0561 + 10681056-10682285,10682546-10682764
          Length = 482

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 304 LQQNCRTQDSHHSSLVSIL--IVVNFLQFVFVYFGLGMVECVVFEETGS 164
           LQ    +  S+ SS++S L  I V ++++  V  G+G V   VF+  GS
Sbjct: 180 LQSYPTSSTSNRSSIMSSLRVICVVYIEYSGVSDGMGTVRACVFDPNGS 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,131
Number of Sequences: 37544
Number of extensions: 265904
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)