Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0080.Seq
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)                  29   1.7  
SB_7887| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)         28   3.9  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   5.2  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_4128| Best HMM Match : Luteo_Vpg (HMM E-Value=1.7)                  27   9.1  
SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18)                   27   9.1  

>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 137 PETSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDDKNAHQTRVMRVLSPTVLLKRTTN 316
           P    P+S  P   +D   N  + K++E+ L  IDDD++      +    P ++L  TTN
Sbjct: 40  PRDCVPTSMVPGDRQD---NDCDGKVDEEILNGIDDDRDGLVDEDLVTRPPVIVLSPTTN 96

Query: 317 LKR 325
            K+
Sbjct: 97  SKQ 99


>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
          Length = 835

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +2

Query: 62  VADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKID 241
           +    +  +  H + G PP   S    TS+P++  PS  + D +N     I      +  
Sbjct: 569 ITPSSISTSEEHKIAGKPPRPKSSKRRTSKPTTHLPSSKQHDTVNDDTKPIPHPPSVRKS 628

Query: 242 DDKNAHQTRVMRVLSPTVL--LKRTTN 316
             + +     +R LSP V+  +K+T +
Sbjct: 629 SLRKSFSQGDVRCLSPEVISSVKKTVS 655


>SB_7887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 182 DDALNHAESKINEDKLQKIDDDKNAHQTRVMRVLSPTVLLKRTTNLKRL 328
           DD  N  + K N+D  +  DDDKN    R+M ++    +++  T ++ +
Sbjct: 21  DDDKNDDDDK-NDDDDKNDDDDKNDDDDRMMTMIRMMTMIRMMTMIRMI 68


>SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)
          Length = 169

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 104 HGVPPMLSSVLPETSQP-SSSRPSLFKDDA 190
           +G+PP  ++ +    +P SS+ PS+F+DD+
Sbjct: 31  YGIPPSAANFIVPRKRPLSSTAPSVFRDDS 60


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 134 LPETSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDDKNAHQTRVMRV 280
           L +  Q ++ +  L KD  +  A+ K +    QKIDD+    QT   R+
Sbjct: 257 LEKELQDTNKKMRLEKDKEVKEAKEKADTKSKQKIDDNNKLIQTLQKRI 305


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 152 PSSSRPSLFKDDALNHAESKIN-EDKLQKIDDDKNAHQT 265
           P   +P   K ++ N +E + N EDK Q+ DDDK+  +T
Sbjct: 684 PKDEKPQ-GKTESANPSEEEHNKEDKPQEKDDDKSEEET 721


>SB_4128| Best HMM Match : Luteo_Vpg (HMM E-Value=1.7)
          Length = 211

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 391 NNQKGRMNCVVERRNDDPLERRFPFNILGAFAPR 492
           +N+  R + +VER    PL+RR   + L +F+P+
Sbjct: 161 SNKIERTSSLVERSTKRPLQRRHTISDLNSFSPQ 194


>SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18)
          Length = 855

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 152 PSSSRPSLFKDDALNHAESKI-NEDKLQKIDDDKNAHQ 262
           PSS +PSL   DA  + +  I ++D  + +D+DK++ +
Sbjct: 494 PSSKKPSLLLYDATGNVDDYIMDDDDDECLDNDKSSEE 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,013,851
Number of Sequences: 59808
Number of extensions: 286013
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)