Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0080.Seq
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +2

Query: 74  PLPLANAHALHGVPPML--SSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKIDDD 247
           PLP A+        P      V P   +P         DDA   A+   N+DK + +++D
Sbjct: 479 PLPGADDDLFGPASPAYVHEDVSPTFEKPLVREIEKTIDDARFIAQHAKNKDKFESVEED 538


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 89  NAHALHGVPPMLSSVLPETSQPSSSRPSLFK 181
           NA   +GV  M  ++L  T +   + P++FK
Sbjct: 112 NADGEYGVTTMTKAILHYTGKVLWTPPAIFK 142


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/60 (20%), Positives = 28/60 (46%)
 Frame = +2

Query: 152 PSSSRPSLFKDDALNHAESKINEDKLQKIDDDKNAHQTRVMRVLSPTVLLKRTTNLKRLD 331
           P  ++    K+D   + ++  NEDKL  + D +  +++  +  +   + +K   N  + D
Sbjct: 15  PVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWDQMTVKELANSAKRD 74


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 237 IFCNLSSFILDSAW 196
           +FC ++  I+D+AW
Sbjct: 6   VFCLMALSIVDAAW 19


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 237 IFCNLSSFILDSAW 196
           +FC ++  I+D+AW
Sbjct: 6   VFCLMALSIVDAAW 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,036
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)