Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0076.Seq
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    29   0.045
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    26   0.24 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   6.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.8  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +2

Query: 233 RTPVDLPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPI 412
           R  +  PY+ ++Y DP  AA  I       LP+H       P P+Y H+Y R   Y  P 
Sbjct: 130 RMAIAWPYA-AVYTDPAFAAS-IFHAAATSLPLHYP----PPPPVYTHHYARYHPY--PN 181

Query: 413 YHVP 424
           + VP
Sbjct: 182 FGVP 185


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 11  PRHHTTLFNYDRYLTEYEHDID 76
           PRH + L N +  +T+YE D+D
Sbjct: 197 PRHASDLDNCNHLMTKYEPDLD 218


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 239 PVDLPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYP 385
           P   P     ++D +A  ER+ +PG  +    R  + Y P    A++YP
Sbjct: 43  PATAPQKPDKWEDVMADIERVIMPGVTHWHSPR-FHAYFPT---ANSYP 87


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 474 RTISTGWLPSTGVPISL 524
           R + + W+P  GVPI +
Sbjct: 43  RELGSQWIPDLGVPIGV 59


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +1

Query: 283 RCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSRL---LQANLPRAKTRA 435
           RC   +    L  P CPS +  L     L   +P+LS +   L   LP A   A
Sbjct: 83  RCNSRESSDSLVQPRCPSGESMLSERAALLRGVPTLSPVGVALPPTLPAAAAAA 136


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -3

Query: 183 LPNLLENARRTAKIWLSSTASRFCQSCLNVF*TFWRSMSCSYS 55
           LP   EN      I +S+   +   S  N F TFW+      S
Sbjct: 417 LPRYTENQLNYPGITVSNIEVQSQGSSKNTFNTFWQQSDVDLS 459


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = +2

Query: 404 RPIYHVPRRVRRGVD----PFDAHKAWQDHL 484
           RP+  VPR + R VD      D    W+D +
Sbjct: 285 RPVNQVPRDLNREVDQIRLSLDDMDRWRDRI 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,772
Number of Sequences: 336
Number of extensions: 3850
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)