Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0076.Seq
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 31 0.20
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 31 0.20
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.45
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.79
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 28 1.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 2.4
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 3.2
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 5.6
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 26 5.6
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 26 5.6
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 5.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 5.6
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 26 5.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 7.4
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 7.4
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 25 7.4
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 7.4
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 25 9.7
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 9.7
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.7
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 9.7
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/92 (18%), Positives = 44/92 (47%)
Frame = +2
Query: 32 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQA 211
F++++ L + DI+ ++T ++ D ++ + ++ ++ G S V+
Sbjct: 1372 FSFNKDLNQQLLDIETSPSEHTQSYNLNLLDVLQHTLRDSLKDIYTLNTGADNSSDNVEE 1431
Query: 212 NTPQRFSRTPVDLPYSKSIYDDPIAAAERITV 307
N F + +D + KS+ ++ + A ER+ +
Sbjct: 1432 NADNLFQSSVLDHVHFKSVVNNEVPADERLAI 1463
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 30.7 bits (66), Expect = 0.20
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 93 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 221
T + GR+ +P S+K R + +RS S R E+RYRPTRR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.45
Identities = 28/102 (27%), Positives = 42/102 (41%)
Frame = +3
Query: 210 PTRRSVFPELLSTYPTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLA 389
P +V P ST T + TT+ S+P P T T L+ T + S+P T+
Sbjct: 408 PVTPTVPPTSSSTPLTTTNCTTSTSVPYTST--PVTSTPLATTNCTT---STSVPYTSTP 462
Query: 390 LSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGVP 515
++ +T C + + STP +T ST VP
Sbjct: 463 VTSTPLTTTNCTTSTSIP-YTSTPVTSTPLTTTNCTTSTSVP 503
Score = 25.8 bits (54), Expect = 5.6
Identities = 24/93 (25%), Positives = 39/93 (41%)
Frame = +3
Query: 243 STYPTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTC 422
ST + TT+ S+P P T T L+ T + S+P T+ ++ +T C
Sbjct: 442 STPLATTNCTTSTSVPYTST--PVTSTPLTTTNCTTST---SIPYTSTPVTSTPLTTTNC 496
Query: 423 QDACDVELIPSTPTRHGRTISTGWLPSTGVPIS 521
+ V + T TIS+ P T P++
Sbjct: 497 TTSTSVPYTSTPVTSSNYTISSS-TPVTSTPVT 528
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 28.7 bits (61), Expect = 0.79
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Frame = +3
Query: 231 PELLSTYPTPS-RFTTTLSLPLRGLRYPATVTCLS---IARSTATPRALSMPTTTLALSI 398
P + YPT + T+ + P G + ++ + LS I+ S++TP S+PT++ LS
Sbjct: 53 PGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILS- 111
Query: 399 ITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGVPISLRTL 533
++T V STPT +S +PS+ IS T+
Sbjct: 112 ----NSTIPTTSPVPTTSSTPT-SSSILSNSTIPSSS-SISASTI 150
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 547 PGPLGRVRSEMGTPVDGSQPVEMV 476
PG LGR+ + +G PVD P++ V
Sbjct: 135 PGTLGRIMNVIGEPVDERGPIKAV 158
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 306 YPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTIS 485
Y + + S + S + S+ +++L+ SI G S + +PST + H +IS
Sbjct: 3634 YDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSIS 3693
Query: 486 TGWLPST 506
P+T
Sbjct: 3694 DTKSPAT 3700
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 418 RAKTRATWS*SLRRPQGMAGPSRQA-GCHR 504
R+ ++ +WS LRRP P RQ+ G HR
Sbjct: 244 RSPSKGSWSSILRRPSLTYSPKRQSTGLHR 273
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -3
Query: 522 ARWV--HRSMAASLSRWSCHALWASKGSTP-RRTRLGTW 415
A+W+ HR + L++W+ W K P RTR W
Sbjct: 322 AKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLW 360
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 240 LSTYPTPS-RFTTTLSLPLRGLRYPATVTCLSIARSTA-TPRALSMPTTTLALS 395
+S+Y PS + T T S+PLR + P T + A ST +P+ + + + LS
Sbjct: 1 MSSYALPSMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPLS 54
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.6
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +2
Query: 92 NTFRHDWQKRDAVE--ESQILAVLRAF---SKRFGRHQSRGKVQANTPQRFSRTPVDLPY 256
N+ +H KR +E Q L+ LR+ S +F R + + + P FS +
Sbjct: 406 NSIKHLPLKRATIEPLSDQALSTLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRAT 465
Query: 257 SKSIYDDPIAAAERITVPG 313
K+I++ IA VPG
Sbjct: 466 GKNIHESAIALFSLHDVPG 484
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 450 PSTPTRHGRTISTGWLPSTGVPISLRTLPKGPGLPHH 560
PS + H I G+ P +T+P GL HH
Sbjct: 314 PSVESLHAHEIRFGFKGEIITPSQSQTIPVNEGLHHH 350
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +3
Query: 273 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIP 452
TT S PL P+ V C IA + ALS+ A G TC+D +P
Sbjct: 82 TTYSYPLISGGAPSAVWCWLIAGAGCMCIALSVAELVSAYPTSGGLYFTCKDLVPARSMP 141
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 5.6
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 261 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDV 440
S T T+S P Y + S+ T + + T S T S + QD+ +
Sbjct: 240 SSLTNTVS-PTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTI 298
Query: 441 ELIPSTPTRHGRTISTGWL-PSTGVPISLRTLPKGPGLP 554
+ PS TI+T L P+T PI+ LP
Sbjct: 299 DSTPS-------TIATSTLQPTTSSPITTSAPSLSSALP 330
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +3
Query: 231 PELLSTYPTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 410
P +Y T S FTT +++ +P T+ S S+ + + + +LS
Sbjct: 511 PSSTQSYSTSSNFTTPITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQSSSLSSSNSS 570
Query: 411 STT 419
+ T
Sbjct: 571 ALT 573
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 538 LGRVRSEMGTPVDGSQPVE 482
LGRV +G P+DG P++
Sbjct: 132 LGRVVDALGNPIDGKGPIK 150
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 182 RHQSRGKVQANTPQRFSRTPVDLPYSKS 265
R +S+GK Q+NTP + P +P+S S
Sbjct: 254 RRKSQGKDQSNTP--VIKAPAPIPFSVS 279
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 219 RSVFPELLSTYPTPSRFTTTLSL 287
+ VFP+ L P P+ F+ LSL
Sbjct: 364 KKVFPQFLEVCPHPATFSAMLSL 386
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 237 LLSTYPTPSRFTT-TLSLPLRGLRYPATVTCLSIA---RSTATPRALSMPTTTLALSIIT 404
L++ YP + T + S L G+R +T IA S P +S PT+ LAL ++
Sbjct: 208 LVNEYPNLAVCQTLSKSFGLAGIRIGFCLTSKPIATIMNSLKAPYNISEPTSRLALDALS 267
Query: 405 GQS 413
QS
Sbjct: 268 PQS 270
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 293 ERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIY 415
++ +V Y P H S RPI +N DY +Y
Sbjct: 875 DKDSVDAYNRFPFHSYFGDKSKRPIETYNKDNFFDYATKLY 915
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 167 SKRFGRHQSRGKVQANTPQRFSRTPVDLPYSKSIYDDPIAAAE 295
SK+ H + T + + TP+ P S +Y DPI E
Sbjct: 293 SKKLQTHPFFCSISLETVSKGNLTPIFRPKSGKVYVDPILDLE 335
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 9.7
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 167 SKRFGRHQSRGKVQANTPQRFSRTP-VDLPYSKSIYDDPIAAAERITVPGYRYLPVHREI 343
SKR GR + G+V ++ + SR+P S+S Y+D + R P RY R
Sbjct: 94 SKRGGRRERGGRVHGDSGRLRSRSPSPHEARSRSPYNDE-RSDRRSMSP--RYRSRSRSP 150
Query: 344 YGYSPRPIYAHNYPR 388
G S P Y P+
Sbjct: 151 DGRSRSPDYDRRSPK 165
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 623 KPDNKPHWGTGAW 661
KP+ KP WG AW
Sbjct: 201 KPELKPEWGWDAW 213
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +3
Query: 426 DACDVELIPSTPTRHGRTISTGWLPSTGVPI------SLRTLPKGPGLPH--HRAYRTPH 581
D C ++IPS R+ R + +PS P+ SL + P +P H+ ++T
Sbjct: 35 DRCTKDIIPSEELRYLRQVLNDSIPSKDEPLPTLKLDSLNDISGEPVIPKIIHQTWKTTE 94
Query: 582 RP 587
P
Sbjct: 95 VP 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,351
Number of Sequences: 5004
Number of extensions: 61583
Number of successful extensions: 232
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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