Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0076.Seq
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1181 + 10148653-10149405 33 0.27
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 32 0.47
08_01_1010 - 10215625-10216335,10216372-10216473 31 0.62
07_03_0518 + 19007793-19008722 31 0.82
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395... 31 0.82
07_03_0512 - 18954515-18955972 31 1.1
07_03_0514 + 18984375-18985865 29 2.5
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.3
12_02_0168 + 14827529-14828050 29 3.3
02_01_0302 - 2021221-2023305 29 3.3
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 29 4.4
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714 28 5.8
09_03_0006 + 11426346-11426420,11426733-11427452 28 7.6
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 28 7.6
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 28 7.6
>06_01_1181 + 10148653-10149405
Length = 250
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 314 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVPRRVRRG 442
+RY+ VH +Y P+ + YP ++ P HV VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 31.9 bits (69), Expect = 0.47
Identities = 28/85 (32%), Positives = 38/85 (44%)
Frame = +3
Query: 177 SEDIRAEERYRPTRRSVFPELLSTYPTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATP 356
+E I E R + RSV P S PTPS +T S R R P+ + AR ++TP
Sbjct: 55 AEQILREARSGRSPRSVPPSRRS--PTPSSSPSTASAAARSSRTPSAAPGGTSARGSSTP 112
Query: 357 RALSMPTTTLALSIITGQSTTCQDA 431
S T+ A + T +T A
Sbjct: 113 GGRSGRGTSPARAPSTSAPSTSPTA 137
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 31.5 bits (68), Expect = 0.62
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Frame = +3
Query: 210 PTRRSVFPELLSTYPTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALS---MPTT 380
P RR+ P+ + PT R + P ST PRA S P+T
Sbjct: 78 PPRRAASPDYTPSTPTTPRRAASPDYTPSTPTPPRRAASPDYTPSTPPPRAASPDYTPST 137
Query: 381 TL----ALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGVP 515
A S ST + A + PSTPT R S + PST P
Sbjct: 138 PTPPRRAASPNYTPSTPQRHAASPDYTPSTPTPPRRAASLDYTPSTPPP 186
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +3
Query: 411 STTCQDACDVELIPSTPTRHGRTISTGWLPSTGVPISLRTLPK-GPGLPHHRAYRTPHRP 587
ST + A + PSTPT R S + PST P P P P RA + P
Sbjct: 76 STPPRRAASPDYTPSTPTTPRRAASPDYTPSTPTPPRRAASPDYTPSTPPPRAASPDYTP 135
>07_03_0518 + 19007793-19008722
Length = 309
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 451 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 323
G NST + WH V WP+ E+ + R GVAV++ +DR+
Sbjct: 198 GWNSTLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVEMEVDRK 243
>03_01_0526 +
3956909-3957071,3957262-3957317,3957398-3957462,
3957560-3958006,3958102-3958227,3958328-3958511,
3958788-3958943
Length = 398
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 165 SLKGSEDIRAEERYRPTRRSVFPELLSTYPTPSRF 269
++KG + E +PTR SV E+ +T PTP RF
Sbjct: 285 TMKGKKMGLKVEAAKPTRSSVLKEVKATPPTPQRF 319
>07_03_0512 - 18954515-18955972
Length = 485
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 451 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 329
G NST + WH +V WP+ E+ + R GVAV L +D
Sbjct: 369 GWNSTLESLWHGVPLVPWPLYAEQRLNAFELVRDMGVAVPLGVD 412
>07_03_0514 + 18984375-18985865
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 451 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 323
G NS + WH V WP+ E+ + R GVAV L +DR+
Sbjct: 381 GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVPLGVDRE 426
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +3
Query: 270 TTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTT---TLALSIITGQSTTCQDACDV 440
T LS P + P+T + + STAT + S P T + A S I T +
Sbjct: 498 TGELSTPTSQI--PSTASTREL--STATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSST 553
Query: 441 ELIPSTPTRHGRTISTGWLPSTGVPISLRT 530
IPSTP+ + +TG +PST L T
Sbjct: 554 SKIPSTPSTCELSTATGKIPSTTCTSPLST 583
>12_02_0168 + 14827529-14828050
Length = 173
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 518 DGYTGRWQPACRDGPAMPCGRRR 450
DG GRW+ CR G + P GRRR
Sbjct: 21 DGGAGRWR--CRSGRSAPGGRRR 41
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 3.3
Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 4/131 (3%)
Frame = +3
Query: 210 PTRRSVFPELLSTYPTPSRFTTTLSLPL----RGLRYPATVTCLSIARSTATPRALSMPT 377
P RR +P+ S+ PTPS + + S P YP+ + + S + P S T
Sbjct: 408 PRRRGPYPQPPSSSPTPSYPSPSSSYPAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTT 467
Query: 378 TTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGVPISLRTLPKGPGLPH 557
+ ST + PS P+ S+ PS P T P P P
Sbjct: 468 PSYPSPNGGKPSTPSHPSPPGSTTPSYPS----PPSSSTTPSYHSPPQGHTTPSHPSPPS 523
Query: 558 HRAYRTPHRPP 590
H PP
Sbjct: 524 SSTAPPSHSPP 534
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 366 SMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGV 512
S T+TL+ + T ++ D + L P+T T GR +T W ++ V
Sbjct: 209 SPTTSTLSGRVTTTAWSSTSDVAFLPLPPTTSTLSGRVTTTAWSSTSDV 257
>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
Length = 411
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 502 DGSQPVEMVLPCLVGVEGINSTSHASWHVVDW 407
D V V C++ + G+ T++ +W +V+W
Sbjct: 279 DNGLMVSRVESCVIKLPGVMGTANETWSIVEW 310
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 309 PATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPT 464
PA + C + + + P M T ++LS + G + T + ++PS+PT
Sbjct: 183 PAAIACCAASTAVWNPNDRLM--TPMSLSAVFGIAATAEPRHAPRIVPSSPT 232
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 167 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPYSK 262
SKR +HQ+R T +R F R PV LP+ +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKE 791
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +3
Query: 354 PRALSMPTT-TLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGVPISLRT 530
P L P +L L++ +T+ + EL +PT R ++ LP+T P+
Sbjct: 70 PSQLQTPRLQSLGLNVKPPAATSRRVNVQQELYAPSPTISHRGLAIPPLPTTSPPVFPPP 129
Query: 531 LPKGPGLPHHRAYRTPHRPP*A*ESKRH 614
+ P LP ++ Y P+ P A RH
Sbjct: 130 IRSYPPLPANKPY--PNSPVVAPPKGRH 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,216,685
Number of Sequences: 37544
Number of extensions: 484934
Number of successful extensions: 1618
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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