Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0074.Seq
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    29   0.69 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.7  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.7  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    27   3.7  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    27   3.7  
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    26   4.8  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   6.4  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   6.4  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   8.5  

>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 639 VIIGISGVTCGGKTTLANKL 698
           +I+G+SG +C GK+TL   L
Sbjct: 6   IIVGVSGASCSGKSTLCQLL 25


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 546 SHKK-SIQYRTTNFVPPSANLS 608
           SH+K  + YRTT+F+P S +LS
Sbjct: 240 SHEKLDLPYRTTDFIPYSKDLS 261


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 540 DLSHKKSIQYRTTNFVPPSANLSQNSNMPGKDWVIIGISGVTCGGKTTLANKLKNALTPV 719
           DLS  ++   +  N V PS NLS NS+          +  V+   +  +  + +NALTP+
Sbjct: 144 DLSINRNTNKKALNAVSPSLNLSSNSS----------VQDVSIDKEEMMKKQSRNALTPL 193


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 642 IIGISGVTCGGKTTLANKLKNALT 713
           I+GISG    GK+TLA+ L   LT
Sbjct: 27  ILGISGPQGSGKSTLASALDTELT 50


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 642 IIGISGVTCGGKTTLANKLKNAL 710
           +I +SG    GKTT +N+LK AL
Sbjct: 3   LIIVSGYPSSGKTTRSNELKKAL 25


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +3

Query: 270 KKLLVLSEPAADPN------IVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 431
           +KLL  +  +AD N       ++   +R K+ + LL     K   ++ +L PEE +  Q+
Sbjct: 35  RKLLEEANSSADENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQN 94

Query: 432 F 434
           F
Sbjct: 95  F 95


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 258 DQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLL 359
           D N+K+     E ++  N+ E +++R KK  P+L
Sbjct: 385 DHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPIL 418


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 519 PHLPLFIDLSHKKSIQYRTTNFVPPSANLSQNS 617
           P+LPL  D S  K ++Y   NF+    N  + S
Sbjct: 253 PNLPLLYDKSSGKRVEYSAFNFLALYENGEERS 285


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 316 TILGSAAGSERTSNFFIFWSTYYH*LCCSFFHF--YFCMDEELLDLQTSNVSY 164
           T+LG     +    FF+ +S+ +  +C SFF +    C+++ +  ++ +N+ Y
Sbjct: 126 TLLGLPLARQVFRQFFVLFSSDFLMICLSFFSYGLQVCIEKNM--IRWANLGY 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,571
Number of Sequences: 5004
Number of extensions: 61292
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)