Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0074.Seq
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 30 2.2
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665... 30 2.2
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 30 2.2
02_01_0323 - 2201294-2202337 30 2.2
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 29 2.9
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 29 3.8
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 29 5.1
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 29 5.1
01_03_0085 + 12310675-12311354,12311475-12311579,12311755-123118... 29 5.1
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635... 28 6.7
06_01_0400 + 2862684-2862872,2862956-2863170,2863298-2863448,286... 28 6.7
01_06_0163 - 27124246-27124335,27124454-27124663,27124746-271248... 28 6.7
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 28 8.8
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 28 8.8
10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576... 28 8.8
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 28 8.8
01_05_0612 - 23652121-23652400,23653031-23654427 28 8.8
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 624 PGKDWVIIGISGVTCGGKTTLANKLKNALTPVY 722
P K V++ I G+ GKTTLAN++ + L P +
Sbjct: 187 PSKKLVVVSIVGLGGLGKTTLANQVYHHLKPEF 219
>08_02_0162 +
13464698-13464974,13465719-13465837,13465920-13466579,
13466686-13466763,13466849-13466938,13467241-13467378,
13467730-13467738
Length = 456
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 712 VRAFFNLLARVVFPPQVTPEMPIMTQSLPGI 620
++A F+ + +V PP V P MP+ +PG+
Sbjct: 407 LQAQFSQMRPMVMPPSVAPRMPMYPPGVPGV 437
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 385 LPFFTSVFSSKGFCFLALCIIFSTILGSA 299
LP TS F K FC + +IF T+ GSA
Sbjct: 534 LPATTSPFKIKKFCLRSASLIFCTVSGSA 562
>02_01_0323 - 2201294-2202337
Length = 347
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 507 PHPVPHLPLFIDLSHKKSIQYRTTNFVPPSANLSQNSNM 623
P PVP D S+ F PPS++LS N NM
Sbjct: 36 PSPVPSAAAAADAVEYGSLPCPAMTFYPPSSSLSGNQNM 74
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +3
Query: 330 QRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 431
+++KK+K + ++++KK E+ +L K++FQD
Sbjct: 162 KKSKKRKGITASSDIKKEAEQYVLHAGSKRNFQD 195
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 327 IQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKE 443
+QR K+Q L E +K KE S E K+ + FEKE
Sbjct: 1097 VQRLKEQGSLRTEREREKDKEASRRLEETKERDKKFEKE 1135
>05_06_0020 + 24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 605 EPKFKYAWQRLGHNRHFRGHLWRKNDPRQ 691
+P+ + +WQ NRH HLWR + Q
Sbjct: 1022 KPEARDSWQPWNANRHVDKHLWRDDSTYQ 1050
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 639 VIIGISGVTCGGKTTLANKLKNAL 710
VI+GI G + GKT+LA K+ N +
Sbjct: 625 VIVGIGGPSGSGKTSLAQKMANII 648
>01_03_0085 +
12310675-12311354,12311475-12311579,12311755-12311877,
12312206-12312376,12312472-12312601,12313003-12313058,
12313602-12313704,12313705-12313914,12314122-12314253
Length = 569
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 524 FTLIYRSEPQKINSVSYNKLCSTISQFEPKFKYAWQRLGHNRH 652
+ ++YR + V+ KL + + Q E +F+ + +GH RH
Sbjct: 204 YGVVYRGQLINGTPVAVKKLLNNLGQAEKEFRVEVEAIGHVRH 246
>08_02_1457 +
27260841-27260965,27261126-27261246,27263455-27263543,
27263776-27263860,27263970-27264074,27264446-27264527,
27264573-27264686,27265029-27265330,27265519-27266114,
27266216-27266376,27266489-27266592,27266697-27266856,
27266942-27267105,27267213-27267545,27267640-27267930,
27268276-27268359,27268430-27268563,27268665-27268892,
27268993-27269164,27269263-27269517,27269778-27270047
Length = 1324
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 522 HLPLFIDLSHKKSIQYRTTNFVPPSANLSQNSNMPGKDWVIIGISGVTCGGKTTLANKLK 701
H+ F+D+ K+ +Y T+ L Q+ + + V+ + G+T GKTTL + L
Sbjct: 727 HINYFVDMP-KEMTKYGVTD---KKLQLLQDVSGAFRPGVLTALMGITGAGKTTLLDVLA 782
Query: 702 NALTPVYV 725
T Y+
Sbjct: 783 GRKTGGYI 790
>06_01_0400 +
2862684-2862872,2862956-2863170,2863298-2863448,
2863566-2863757,2864471-2864633,2864754-2864989,
2865446-2865622,2865707-2865826,2865939-2866241
Length = 581
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 570 RTTNFVPPSANLSQNSNMPGKDWVIIGISGVTCGGKTTLANKLKNALTPVY 722
R VP SANL Q+ G ++IG GV GKTT+ ++ L Y
Sbjct: 98 RVGRAVPGSANLLQDLVKDGGSLLLIGPPGV---GKTTVIREIARMLADDY 145
>01_06_0163 -
27124246-27124335,27124454-27124663,27124746-27124875,
27124973-27125143,27125268-27125387,27125642-27125746,
27125819-27126471
Length = 492
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 524 FTLIYRSEPQKINSVSYNKLCSTISQFEPKFKYAWQRLGHNRH 652
+ ++Y+ V+ K+ + + Q E +F+ + +GH RH
Sbjct: 195 YGIVYKGRLMNGTEVAVKKILNNVGQAEKEFRVEVEAIGHVRH 237
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 524 FTLIYRSEPQKINSVSYNKLCSTISQFEPKFKYAWQRLGHNRH 652
+ ++YR V+ K+ + + Q E +F+ + +GH RH
Sbjct: 653 YGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRH 695
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 524 FTLIYRSEPQKINSVSYNKLCSTISQFEPKFKYAWQRLGHNRH 652
+ ++YR V+ K+ + + Q E +F+ + +GH RH
Sbjct: 271 YGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRH 313
>10_08_0512 +
18455454-18456121,18456214-18456318,18457493-18457615,
18457732-18457902,18458076-18458205,18458458-18458670,
18458757-18458866,18459144-18459186
Length = 520
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 524 FTLIYRSEPQKINSVSYNKLCSTISQFEPKFKYAWQRLGHNRH 652
+ ++YR V+ KL + + Q E +F+ + +GH RH
Sbjct: 200 YGVVYRGRLINGTDVAIKKLLNNMGQAEKEFRVEVEAIGHVRH 242
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 588 PPSANLSQNSNMPGKDWVIIGISGVTCGGKTTLANKL 698
PP + + + K +IG+SG T GKTT+ + +
Sbjct: 51 PPPPSAAAAAEEGSKQPFVIGVSGGTASGKTTVCDMI 87
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 703 FFNLLARVVFPPQVTPEMPIMTQSLPGIFEFWLKLADG 590
FF+L + P Q+ PE P++ P + F L L +G
Sbjct: 365 FFSLASNEHLP-QIVPEFPLVDMEDPNVIYFTLPLEEG 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,039,177
Number of Sequences: 37544
Number of extensions: 350327
Number of successful extensions: 1032
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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