Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0074.Seq
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_53315| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_11808| Best HMM Match : Glycos_transf_1 (HMM E-Value=0.0021)        29   3.9  
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_47850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 315 VEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKELF 449
           + K I  + K K LLE  +V + K   IL  EE+  F++  +E+F
Sbjct: 61  IPKCITESVKLKDLLEELKVAREKCHEILVKEEQDLFKERREEIF 105


>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +3

Query: 261 QNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEK 440
           + ++KL    E   +    EK+ Q+AKK++   +  E +K +EK  +  E+++  +  EK
Sbjct: 292 EKLEKLAKKKEELKERKRQEKLEQKAKKKEKERQEREKEKEREKERIQQEKEKQKERREK 351

Query: 441 E 443
           E
Sbjct: 352 E 352


>SB_53315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +2

Query: 506 SSPCTTFTLIYRSEPQKINSVSYNK--LCSTISQFEP-KFKYAWQRLGHNRHFRGHLWRK 676
           S+ C +F   Y  E  KI S   N   +C+++      K  Y W+     R+  GHLWR 
Sbjct: 111 STQCASFVNTYEEEVLKILSQELNPDMVCTSLGLCSGVKQGYLWRYSA--RYCTGHLWRY 168

Query: 677 N 679
           N
Sbjct: 169 N 169


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 291 EPAADPNIVEKI-IQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKELF 449
           E AAD  +VEK  ++  K+QK     +  KK KEK +   E ++  ++    +F
Sbjct: 232 EEAADEILVEKTEVKEKKQQKRKFSFSNKKKNKEKEMDVSESEEKGEEMAPGMF 285


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 330 QRAKKQKPLLENTEVKK--GKEKSILFPEEKQSFQDFEKE 443
           +  K Q P L   E+ K  G+E + L PEEKQ F D  +E
Sbjct: 213 ESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQKFLDEAEE 252


>SB_11808| Best HMM Match : Glycos_transf_1 (HMM E-Value=0.0021)
          Length = 496

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 261 QNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTE 371
           + I K +V+  P  DPN+ E      K+QK  LEN +
Sbjct: 205 EGILKKIVIIPPGLDPNVFEIGEDFDKRQKAFLENVQ 241


>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 321 KIIQRAKKQKPLLENTEVKKGKEKSIL 401
           K I+R K+Q   LEN+ VK GK+K  L
Sbjct: 5   KTIKRLKQQIASLENSNVKMGKQKKRL 31


>SB_47850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 451 VAELHNYIKKYMYMDIPNVLTLYHIY 528
           V E HNY       DIPN + +Y IY
Sbjct: 258 VVEFHNYRGPPFISDIPNAVPIYPIY 283


>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 548 PQKINSVSYNKLCSTISQF----EPKFKYAWQRLGHNRHFRGHLWRKND 682
           P+KI   +  K  +T+SQF    +    +  Q LGH+ H     +R ++
Sbjct: 209 PKKITGTNLRKYIATVSQFGALTQTDIDWQAQHLGHDVHMHHEFYRLHE 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,160,894
Number of Sequences: 59808
Number of extensions: 420516
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)