Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0074.Seq
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm rece...    31   0.85 
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81071-1|CAB03014.2|  510|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical p...    28   6.0  
AY523513-1|AAR98635.1|  510|Caenorhabditis elegans acetylcholine...    28   6.0  
Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    28   7.9  
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    28   7.9  

>AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 247 protein.
          Length = 344

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 510 HPVPHLPLFIDLSHKK--SIQYRTTNFVPPSANLSQNSNMPGKDWVIIGISGV 662
           HP+P   +F+D+ + K  ++Q    ++  P   +     +   +W ++G +GV
Sbjct: 152 HPIPQADIFLDVEYLKPRNLQLTEISYSGPCFQVQDEKGVLRMNWDVVGTTGV 204


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 318 EKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKE 443
           EK  +  KKQK LL+  E  + KEK      EK+  ++ E+E
Sbjct: 194 EKRREEKKKQKELLKEKERSERKEKERELEREKEKSREKERE 235


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 388 KNPSFSLKKNNHF--KTLKKNCFVAELHNYIKKYMYMDIP 501
           + P  ++ KN+ F  KTL+ N FV   +N+ KK +  ++P
Sbjct: 222 RKPERNMTKNSMFIKKTLEVNAFVINCYNHSKKAVKPEVP 261


>Z81071-1|CAB03014.2|  510|Caenorhabditis elegans Hypothetical
           protein F28F8.1 protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 477 KIYVYGHS*CPHPVPHLPLFIDLSHKKSIQYRTTNFVPPSA 599
           KIY   +  CPHP P +  F+ L  ++S  Y   + V PSA
Sbjct: 211 KIYQKIYDCCPHPFPDVTYFMVL--RRSPSYYIFSLVIPSA 249


>Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical
           protein K07F5.12 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 439 FSKS*NDCFSSGKRMDFSLPFFTSVFSSKGFCFLALCII 323
           + K  N    S +  D+  PF+TSVF      F A C+I
Sbjct: 220 YLKQQNPPTDSFQVFDYIFPFYTSVFLFSTLYFFAYCVI 258


>AY523513-1|AAR98635.1|  510|Caenorhabditis elegans acetylcholine
           receptor, one ofnine alpha a7-like nicotinic
           acetylcholine receptor subunits(58.6 kD) (acr-18)
           protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 477 KIYVYGHS*CPHPVPHLPLFIDLSHKKSIQYRTTNFVPPSA 599
           KIY   +  CPHP P +  F+ L  ++S  Y   + V PSA
Sbjct: 211 KIYQKIYDCCPHPFPDVTYFMVL--RRSPSYYIFSLVIPSA 249


>Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical
           protein T05E11.2 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 451 QNNSFSKS*NDCFSSGKRMDFSLPFFTSVFSSKGFCFLALCIIFSTILGS 302
           +  S ++   DCF      DF L     + +S G C LA+C    TI  S
Sbjct: 57  EGGSHTQPSRDCFG-----DFELASIILISASLGCCILAICFAICTIFTS 101


>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 564 QYRTTNFVPPSANLSQNSNMPGKDWVIIGISGVTCGGKTTLANKL 698
           Q + T FVP S N ++   +P     +I + G+   GKT +++KL
Sbjct: 9   QRKMTYFVPKSDNSNEQVRVPN----VIALVGLPARGKTYISHKL 49


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 564 QYRTTNFVPPSANLSQNSNMPGKDWVIIGISGVTCGGKTTLANKL 698
           Q + T FVP S N ++   +P     +I + G+   GKT +++KL
Sbjct: 15  QRKMTYFVPKSDNSNEQVRVPN----VIALVGLPARGKTYISHKL 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,330
Number of Sequences: 27780
Number of extensions: 345523
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)