Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0074.Seq
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.74 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.1  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 636 WVIIGISGVTCGGKTTL-ANKLKNALTPVY 722
           W+++   G+TC G T + +  L N+L  +Y
Sbjct: 4   WLLLMYLGITCQGVTDIHSRNLTNSLKVIY 33


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 155 FSLLCSSGSTNSNACLIKAEDIF*D 81
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 155 FSLLCSSGSTNSNACLIKAEDIF*D 81
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 155 FSLLCSSGSTNSNACLIKAEDIF*D 81
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 155 FSLLCSSGSTNSNACLIKAEDIF*D 81
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 361 RTQK*KKVKKNPSFSLKKNNHFKTLKKNCFVAELHNYIKKYMY 489
           R+++ K +    + ++  NN++K    N +    +NY KK  Y
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,328
Number of Sequences: 438
Number of extensions: 4704
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)