Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0070.Seq
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.95
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 1.3
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 1.7
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 2.2
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 3.8
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 3.8
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 27 3.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.1
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 26 5.1
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 5.1
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.1
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 26 5.1
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 26 6.7
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.7
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 26 6.7
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 8.9
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 8.9
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.95
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 632 LKALPKDYYQQTYKALPS----GYYQPQASEQQASVVAPPNSQ 748
L ALP+D TY+A PS GY P ++ + SV +PP S+
Sbjct: 32 LPALPQDRTTSTYRATPSSADAGYNAPSSTFE--SVRSPPESR 72
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 138 VLLCFFGLDVNLENIDAGFRRRRHNCDHGENRHNTQHGSS 19
+L+ F GL VNL I A HN DHG + H++ S
Sbjct: 454 LLVSFLGLVVNLVGILAF--NHGHNHDHGSHHHHSHSNHS 491
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 280 RILRTTLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 417
R++ + +K+++ P T DKT +P D + N+ I+S P TS
Sbjct: 21 RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 62 QLCLRRRNPASMFSKLTSSPKKHRS 136
QL LRR+ A+ SKL+SS H S
Sbjct: 741 QLLLRRKQGATCLSKLSSSSSSHTS 765
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 3.8
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +1
Query: 295 TLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTG 474
TLK+ T+ P T KTV + T P+ + S P +SP ++ + + SR +
Sbjct: 241 TLKQSTIIPRTPQKTV-RSIVKQTSSPHSSKMPKHSLP-SSPTPFNSNSGDSLLSR-IKN 297
Query: 475 QTETVSTRKTTS*GRAETSRRGS 543
++ S R T + G E ++ S
Sbjct: 298 SNQSSSERPTANNGAQEQNQSSS 320
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 641 LPKDYYQQTYKALPSGYYQPQAS 709
+PK Y + Y +PS Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 718 LLFGCLWLVITTWKGFVGLLVI 653
LLFGCL +V + + F+GL +
Sbjct: 49 LLFGCLTIVFSAFASFLGLYFV 70
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 366 QTPESAKVENRVRSGDVTGSYIYKDGKNDLIKVRYWSDRDG-FHQEDNFL 512
++ E K + + + D S + K D K+R W+DR G F E FL
Sbjct: 618 KSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRTWTDRTGAFKVEAEFL 667
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 91 IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 195
ID+ +D P E AQKY+ + PFT P A LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 355 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTE 483
P + LP+ S I+ D ETS A + + + +S VT + E
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVTTKPE 315
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 473 VRPRRFPPGRQLPKVELKPVEE 538
V P RF P + L E+KP+EE
Sbjct: 773 VNPERFLPTKSLKLEEMKPLEE 794
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 141 KQPTIHRSSISWPHRCLTIDQIQRPEVSYS*SRPHSWTYWKNGKEIENTEDYVEEV 308
K P IS + +DQ++ E S +RP+ W N N ++Y+ V
Sbjct: 15 KSPENQSKCISRLRYMVMLDQVESDEGGNSSTRPYVWAVLLNAPP-RNADEYIRYV 69
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 613 LLCSSGSSFLPCFFMSYTSSPHIWSLFYWFQLDL 512
+L +G+ F+P + +T H+ +++ W L L
Sbjct: 190 ILLGAGTVFVPLMWCYFTHDLHLVTMYIWITLRL 223
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 332 TRRSRCICLRIPDSRICEGRKSRQIRR 412
TRRS L+IPDS IC R+ R
Sbjct: 461 TRRSSFSTLKIPDSDICFTRRRSDSNR 487
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 6.7
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -2
Query: 371 SLVSVGI-CT*TVLSVVLGRIVYFFNVVLSILDFLSVLPVCPRVGPASAVRNLWSLYLIN 195
S +VGI T L + G+ NV LS+L + + PRVGP+ R +
Sbjct: 4 SCFNVGIWATGLALLMNQGQSPLLSNVGLSVLAYKATAMFIPRVGPSFIKRGFSGKDMNK 63
Query: 194 GKTAVRPAN*GSVNGGLFKYFC 129
+ V P G+V+ L + C
Sbjct: 64 VEKYVIPETMGAVS-ALVYFMC 84
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 273 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 386
E+ +ED V V + + ++ L G YAYGY+TP + +
Sbjct: 10 ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 308 IRC-VPIPRTRRSRCIC-LRIPDSRICE 385
IRC +PIPRTR SR + DSR E
Sbjct: 34 IRCDIPIPRTRTSRPFAFVEYEDSRDAE 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,103
Number of Sequences: 5004
Number of extensions: 66057
Number of successful extensions: 234
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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