Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0070.Seq
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    30   2.3  
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505...    29   3.0  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    29   4.0  
12_01_0622 + 5124213-5125292,5126820-5128685                           28   9.3  
07_03_1641 + 28318256-28318309,28318420-28318458,28318544-283185...    28   9.3  
02_01_0529 - 3846489-3847268                                           28   9.3  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    28   9.3  
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030...    28   9.3  

>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 396 RVRSGDVTGSYIYKDGKNDLIKVRYWSDRDGFH 494
           +V  GD TG+ +   G NDLI +R+  D +  H
Sbjct: 851 QVLDGDSTGNLVVPIGMNDLINLRHLIDHEEVH 883


>07_01_0675 +
           5055842-5055950,5056036-5056193,5056276-5057067,
           5057544-5057760,5058280-5058449,5058986-5059630
          Length = 696

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 387 VENRVRSGDVTGSYIYKDGKNDLIKVRY 470
           V N V S  +TG Y+Y+ G +  +  RY
Sbjct: 537 VNNNVGSASITGGYVYRSGTDPCLAGRY 564


>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 246  SWTYWKNGKEIENTEDYVEEVYDAS 320
            SW  W+  K+I   ++YV+  YD S
Sbjct: 1014 SWKQWRRRKKIHRLQEYVKSEYDHS 1038


>12_01_0622 + 5124213-5125292,5126820-5128685
          Length = 981

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 366 GIRRHMHLDRLVRGIGTHRILLQRSPQYSRFPFRSSSMSKSGACFSC 226
           GI +   L  L+ G+   R LLQ+ PQ+      S+ +    +C  C
Sbjct: 655 GIAKLEKLRYLLAGVNFSRDLLQKMPQFGMENHNSNLLGNLASCLYC 701


>07_03_1641 +
           28318256-28318309,28318420-28318458,28318544-28318597,
           28318653-28318780,28318993-28319044,28319211-28319309
          Length = 141

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 145 CLSTSVLLRARCQFGKHRCRVSATQTQLRPRREQTQYAAWFFFFFL 8
           CL   ++   + +    RCR  A  ++ R R+ +  Y +WF+   L
Sbjct: 58  CLDGKMMENEQQKCFCRRCRTGAPTSRHRSRQARMSYCSWFWHMIL 103


>02_01_0529 - 3846489-3847268
          Length = 259

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 680 PSGYYQPQASEQQASVVAPPNSQP 751
           P+  Y PQA    A  V PP SQP
Sbjct: 24  PAAAYPPQAMVPGAPAVVPPGSQP 47


>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
            33224174-33224411,33224492-33224642,33224733-33224997,
            33231775-33231820,33232167-33232815,33232883-33233384,
            33235023-33235360,33235466-33235676,33235769-33235992,
            33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 6/27 (22%), Positives = 18/27 (66%)
 Frame = +3

Query: 243  HSWTYWKNGKEIENTEDYVEEVYDASQ 323
            ++W  WK GK ++  ++ + +++D ++
Sbjct: 1557 YAWMLWKEGKSVDLLDELIGDIFDDNE 1583


>01_03_0009 +
           11601394-11601666,11602486-11602683,11602809-11603081,
           11603493-11603595,11603666-11603784,11604038-11604214,
           11604443-11605192
          Length = 630

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +2

Query: 383 EGRKSRQIRRRHRLVYLQGRQK*SHQGTLLVRPRRFPPGRQLPKVELKPVEEAPD 547
           E   +++I      V      + S     L R + +PPGR +  V + P +  PD
Sbjct: 513 EAAAAKEIMEEESAVLKNVEDRQSFSSDSLERQQFYPPGRIMHMVAMPPADSCPD 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,302,671
Number of Sequences: 37544
Number of extensions: 459303
Number of successful extensions: 1437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)