Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0070.Seq
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 36 0.031
U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidan... 31 0.67
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 30 2.1
U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 29 4.7
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 29 4.7
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 29 4.7
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 29 4.7
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 29 4.7
Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 28 8.3
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = +1
Query: 292 TTLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVT 471
TT T P TT PT T + + + P T+P +T T +++
Sbjct: 238 TTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTK 297
Query: 472 GQTETVSTRKTTS 510
T T T KTTS
Sbjct: 298 STTTTTKTTKTTS 310
>U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidance
abnormal protein10 protein.
Length = 419
Score = 31.5 bits (68), Expect = 0.67
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +1
Query: 271 RKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKM 450
+KS ++ TT KK + K + +P+ AS P+TSPA+ +T T +
Sbjct: 21 KKSSVIETTTKKTS---GIESKLLPNELPSTGTTGTSGVKNGASSPKTSPAKTTTTTTTV 77
Query: 451 ISSRYVTGQTETVST 495
++ + T +ST
Sbjct: 78 VTQKVSNQPTAPIST 92
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 656 YQQTYKALPSGYYQPQASEQQASVVAPPNSQP 751
YQQ + +LP PQ +QQ S + PP P
Sbjct: 740 YQQQHPSLPRSASTPQPIQQQQSSIPPPPPPP 771
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 656 YQQTYKALPSGYYQPQASEQQASVVAPPNSQP 751
YQQ + +LP PQ +QQ S + PP P
Sbjct: 740 YQQQHPSLPRSASTPQPIQQQQSSIPPPPPPP 771
>U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical
protein C04E7.3 protein.
Length = 518
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Frame = +1
Query: 223 RTAEAGPTLGHT----GRTERKS--RILRTTLKKYTMRPNTTDKTV*VHMPTDTRLPNLR 384
R A A P +G+T G+ + ++ ++ ++T+KK +P TT PT P
Sbjct: 104 RAAAAPPWIGYTQTYQGQQKYRNPQKLQQSTIKKRP-KPETTSGPKKASKPTSLSEPKKT 162
Query: 385 RSKIASDPETSPARISTRTAKMISSRYVTGQTETVSTRKTTS*GRAETSRRGSR 546
I+ D S + A++ + + TE K +ET RR +
Sbjct: 163 ECSISEDELLSASLAERVQAEVSENEQIENLTEWAQAYKQKQEKSSETKRRSRK 216
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 308 IRCVPIPRTRRSRCICLRIPDSRI 379
+RC+ R RRSR +C+ + + R+
Sbjct: 104 VRCLKASRRRRSRRVCIEVEEDRV 127
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 623 EDRAVVQQRQQLLAMLFHELYEQPSHLEPLLLVSAR 516
E R VV+ Q L HE +++P H E LL +A+
Sbjct: 857 EARKVVRHSQLLTEQFQHEAHQRPEHRERLLDAAAK 892
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 389 RKSRQIRRRHRLVYLQGRQK*SHQ-GTLLVRPRRFPPGRQLPKVELKP 529
RK R+ +RRHR +G Q HQ G++ RR + PK+ P
Sbjct: 35 RKDRERKRRHRSSSSEGSQAEPHQLGSIFREERRRRERNESPKLPPPP 82
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 264 NGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVRSGDVTGSYIY 434
N + N +Y+++ D Q + G + Y + ++ +PE++K +EN +
Sbjct: 313 NAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI----------- 361
Query: 435 KDGKNDLIKVRYWSDRD 485
K NDL+KV+ W ++D
Sbjct: 362 KQLVNDLVKVKLWGEQD 378
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 623 EDRAVVQQRQQLLAMLFHELYEQPSHLEPLLLVSAR 516
E R VV+ Q L HE +++P H E LL +A+
Sbjct: 857 EARKVVRHSQLLTEQFQHEAHQRPEHRERLLDAAAK 892
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 623 EDRAVVQQRQQLLAMLFHELYEQPSHLEPLLLVSAR 516
E R VV+ Q L HE +++P H E LL +A+
Sbjct: 857 EARKVVRHSQLLTEQFQHEAHQRPEHRERLLDAAAK 892
>Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical
protein T09B9.2 protein.
Length = 516
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 712 FGCLWLVITTWKG--FVGLLVIILRKSFEGVLRIGLLCSSGSSFLPCFFM 569
FG L++VIT W+ G I+ +F V L S+G+SF FF+
Sbjct: 93 FGSLFMVITGWQADRLNGKWTIVAAMAFIIVSNAVLPISAGASFALVFFL 142
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 413 RHRLVYLQGRQK*SHQGTLLVRPRRFPPGRQLPKVELKPVE 535
R +VY+ ++ + L P R PP R+ +ELKP +
Sbjct: 247 RANVVYVSSTEQPTKPAPLRFSPARSPPVRRALPIELKPTQ 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,619
Number of Sequences: 27780
Number of extensions: 377926
Number of successful extensions: 1295
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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