Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0070.Seq
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    31   1.1  
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    30   1.5  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    29   2.5  
At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta...    29   3.4  
At4g01240.1 68417.m00163 hypothetical protein                          29   4.4  
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ...    28   7.7  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    28   7.7  
At1g71680.1 68414.m08271 lysine and histidine specific transport...    28   7.7  

>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 682 WKGFVGLLVIILRKSFEGVLRIGL--LCSSGS--SFLPCFFMSYTSSPHIWSLFYWFQLD 515
           W+G +  L   L +  +GVLR+G   LC        L  FF +Y    H+ ++     LD
Sbjct: 404 WEGILRRLENSLDRKIDGVLRVGYDHLCEDDQFLYLLIAFFFNYVDDDHVKAMLVEDNLD 463

Query: 514 LR 509
           ++
Sbjct: 464 VK 465


>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 78  RRRHNCDHGENRHNTQHGSS 19
           +RRHN ++GE  H T  GSS
Sbjct: 543 KRRHNSENGEESHKTSRGSS 562


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 243 HSWTYWKNGKEIENTEDYVEEVYDASQ 323
           H+W  W+NG  +E  +  + E Y +S+
Sbjct: 824 HAWRLWRNGSPLELVDPTIGESYQSSE 850


>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam PF00226: DnaJ
           domain; similar to dnaJ (GI:144832) [Clostridium
           acetobutylicum]
          Length = 207

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 254 CPRVGPASAVRNLWSLYLINGKTAVR 177
           CP  G  SA+ N+ S  +ING+T +R
Sbjct: 104 CPNCGQNSAMTNISSTEVINGRTFIR 129


>At4g01240.1 68417.m00163 hypothetical protein 
          Length = 659

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 742 IRWGHY*CLLFGCLWLVITTWKGF 671
           +RWG Y C  F CL    T  KGF
Sbjct: 437 VRWGQYKCKNFACLASNTTARKGF 460


>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
            unknown protein (emb|CAB87688.1)
          Length = 1417

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 246  SWTYWKNGKEIENTEDYVEEVYDAS 320
            SW  W+  ++I   ++YV+  YD S
Sbjct: 992  SWKQWRRRRKIHRLQEYVKSQYDHS 1016


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 348 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLI--KVRYWSDRD 485
           +Y  G +T  +++V  ++  G+    Y++ DG+N +I   +  WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541


>At1g71680.1 68414.m08271 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GB: AAC49885 GI:2576361 from (Arabidopsis
           thaliana); contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 434

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 661 LVIILRKSFEGVLRI--GLLCSSGSSFLPCFFMSYTSSPHIWSLFYW 527
           LV +    F G+L    GL+ SS S FLPC        P  +S  +W
Sbjct: 369 LVAVCIPFFGGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWW 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,863,247
Number of Sequences: 28952
Number of extensions: 361118
Number of successful extensions: 1215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)