Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0069.Seq
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    28   7.2  
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437...    28   9.5  

>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 183 YIDASNLIYFFSSS--WASFGTQTSRLKVYMCSGRRLRVRKHKNG 55
           Y+D +NL+Y       +A+ GT+ +    YM +     V+ H+NG
Sbjct: 535 YVDQANLVYTVPGMEYYAAAGTEGTHASYYMQTSEPHVVQAHQNG 579


>01_05_0769 -
           25042022-25042447,25042856-25043234,25043714-25043763,
           25044222-25044442,25045085-25045385
          Length = 458

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 233 RNYKKVKVEYVDFPEQITLMLQI*FI 156
           R YK++++  + +P ++TLML I FI
Sbjct: 338 RTYKEMELGGIKYPAEVTLMLPILFI 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,533,278
Number of Sequences: 37544
Number of extensions: 257727
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)