Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0069.Seq
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 324 FTIYFLYVLYIRICIHIIVLNLITDFRQP 238
           + I+ + ++ I IC+ ++VLN+   FR P
Sbjct: 310 YLIFAMILVSISICVTVVVLNV--HFRSP 336


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 324 FTIYFLYVLYIRICIHIIVLNLITDFRQP 238
           + I+ + ++ I IC+ ++VLN+   FR P
Sbjct: 310 YLIFAMILVSISICVTVVVLNV--HFRSP 336


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 333 YFLFTIYFLYVLYIRICIHI 274
           +FL  + F+ VLYIRI + I
Sbjct: 213 FFLIPMVFIAVLYIRIGLRI 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,022
Number of Sequences: 438
Number of extensions: 3889
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)