Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0066.Seq
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.2  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   8.2  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 536 CLKFR*NFVCFVFVYMAFVFLIPLL 462
           C K R + +C +  ++A +F  P+L
Sbjct: 182 CTKTRASLICLLAWFIAALFTSPIL 206


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 536 CLKFR*NFVCFVFVYMAFVFLIPLL 462
           C K R + +C +  ++A +F  P+L
Sbjct: 182 CTKTRASLICLLAWFIAALFTSPML 206


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 54  YLFYPSFNPITGIYAIVKQLCIHDYVLL*SKKI 152
           YL +  F P+   +A    L  H Y ++ +K++
Sbjct: 278 YLPFAQFGPVIDSWATQPVLPTHPYQIIKNKQV 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,999
Number of Sequences: 336
Number of extensions: 4127
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)