Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0066.Seq
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC024788-4|ABE73331.1|  305|Caenorhabditis elegans Hypothetical ...    29   2.7  

>AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical
           protein ZC132.3a protein.
          Length = 578

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -1

Query: 536 CLKFR*NFVCFVFVYMAFV----FLIPLLEFIFKKFCEIMNRHIDFTKTEVS 393
           CL    NF+ +  +   FV    FL+P +  IF+ FC    +H++F + E++
Sbjct: 525 CLFVAGNFINYEIIISMFVTSDLFLVPSMVLIFEVFCR--PKHVEFQEVEMT 574


>AC024788-4|ABE73331.1|  305|Caenorhabditis elegans Hypothetical
           protein Y46E12A.4 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 476 LIPLLEFIFKKFCEIMNRHIDFTKTEVS 393
           L P+LEF FK  CE +N  I  T   +S
Sbjct: 32  LFPILEFAFKGLCEHLNYKIGVTMEPIS 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,041
Number of Sequences: 27780
Number of extensions: 342608
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)