Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0065.Seq
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.26 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.3  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   5.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 298 KDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 420
           KD+ NK+   +   + +YK+ D I    K+EI D+L ++ V
Sbjct: 546 KDEANKKGVSLRFYNVVYKLIDNI----KKEIYDILPEVDV 582


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 723 TTLPEKNASKRRRND 679
           TT+P +   KRR+ND
Sbjct: 259 TTIPTRRLRKRRQND 273



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 56   QYAGTSGIVLQLQVG 12
            +Y   SG+V+QLQ G
Sbjct: 1549 EYGAVSGLVVQLQRG 1563


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -1

Query: 696 KRRRNDLCRRSAPSCSRTSSVGLQDHSS*YQWQLHH 589
           KRR+ +L +      +   S+  +DH+    W ++H
Sbjct: 9   KRRKKNLNQNQMMIWALDCSIKPKDHNGSIYWSMYH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,998
Number of Sequences: 438
Number of extensions: 5487
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)