Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0064.Seq
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    91   9e-20
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    28   0.97 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   1.3  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.0  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   9.0  

>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 91.5 bits (217), Expect = 9e-20
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
 Frame = +3

Query: 3   RMNWMLHFGQPPRYAPDVKIIQVEISPARISQQQ-EIRISSTLRH*TFYRSSCKKVVRKE 179
           R+NW+  +G PP+++P+ K IQ++ +   +     ++ ++             K V   +
Sbjct: 271 RLNWIFQYGLPPKWSPNAKFIQIDTNAETLGNNAADLDLAIWADVGLTIDCLFKLVQTWK 330

Query: 180 VLIATSKQQLVAGTETETKSKHRICEAQASSTAVPLNY--YTVFKTVQQGIPKDS---II 344
             +  S   L    ET +K++ +  E++ SS  + +NY  Y V + +Q    K       
Sbjct: 331 YSVGISTPYLRTLNETRSKNEKKALESRKSSIPLQMNYALYVVNEELQSLSLKSKRNITW 390

Query: 345 VSEGANTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAA 473
           VSEGANTMD GR LL   HPR RLDAGT  TMGVG G+AIA+A
Sbjct: 391 VSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASA 433



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 509 ICVEGDSAFGFSGMVXET 562
           + VEGDSAFGFS M  ET
Sbjct: 442 VVVEGDSAFGFSAMELET 459


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +1

Query: 109 SELAVHSDIRPFTEALVKRLSER 177
           S+++V SD+ PFT  L+K++S+R
Sbjct: 233 SDVSVPSDVLPFTIKLLKKISQR 255


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +3

Query: 444 VGPGFAIAAAMWCRDYAPGKRVFVLKETLLLASQAWX*RHVPVQVTCNYNHSKQ*WNL 617
           +  GF  +A +W   + P K +  + E L L    W  + +    T   +  K  W+L
Sbjct: 230 IATGFGHSARVWRCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWSL 287


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 195 SKQQLVAGTETETKSKHRICEAQA-SSTAVPLNYYTVFKTVQQGIPKDSII 344
           S+Q     T+ E  S  +  E Q  SS  +P+N    +  + QGIP++++I
Sbjct: 22  SRQTPSEFTKKEEDSSTKESELQTRSSPPLPVNTSLEWNMLNQGIPEEAMI 72


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +3

Query: 33  PP--RYAPDVKIIQVEISPARISQQQEIRISSTLRH*TFYRSSCKKVVRKEVLIATS--K 200
           PP   Y+P V +     SP        ++ SST+R+ T  +S  KK  RK     TS  +
Sbjct: 217 PPIEEYSPSVSL---PTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSSYR 273

Query: 201 QQLVAGTETETKSKHRIC-EAQASSTAVPLNYYTVFK 308
           Q   +        KH I  E +  S++    Y  VF+
Sbjct: 274 QNSPSSQVPPVSKKHVIIYENKEGSSSSESVYEDVFE 310


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 330 KDSIIVSEGANTMDIGRGLLLN 395
           KD +IVS+G N+ ++ R + +N
Sbjct: 39  KDDLIVSKGGNSRELARNVPVN 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,980
Number of Sequences: 5004
Number of extensions: 52645
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)