Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0064.Seq
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591...    82   4e-16
10_07_0128 + 13195958-13196011,13196399-13196407,13197257-131973...    30   1.7  
12_01_0413 + 3286897-3286990,3287269-3287432                           29   2.3  
01_04_0008 + 15041682-15041909,15042035-15042319,15042406-150427...    28   5.3  
12_01_0412 + 3283425-3283518,3284046-3284205,3284532-3284634,328...    27   9.3  
04_03_0140 - 11736496-11736702,11737950-11738456                       27   9.3  
01_06_1588 + 38474698-38477169                                         27   9.3  
01_01_0433 + 3282195-3285185                                           27   9.3  

>01_05_0047 +
           17557087-17558350,17558396-17558475,17559115-17559149,
           17559545-17559551,17560405-17560719
          Length = 566

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
 Frame = +3

Query: 3   RMNWMLHFGQPPRYAPDVKIIQVEISPARIS-QQQEIRISSTLRH*TFYRSSCKKVVRKE 179
           R+NW+LHFG+PP+++ DVK I V++    I  ++  + I    +         +++  + 
Sbjct: 280 RLNWLLHFGEPPKWSKDVKFILVDVCEEEIELRKPHVGIVGDAKR--VVELINREIKDQP 337

Query: 180 VLIATSKQQLVAGTETETKSKHRICEAQASSTAVPLNYYTVFKTVQQGIPKDS----IIV 347
             +A S   + A T+    +  ++ EAQ +   VP N+ T  + ++  I  +     ++V
Sbjct: 338 FCLAPSHPWVEAITKKARDNVLKM-EAQLAKDVVPFNFLTPLRIIRDAILAEGNPAPVVV 396

Query: 348 SEGANTMDIGRGLLLNNHPRHRLDA 422
           SEGANTMD+GR +L+ N PR RLDA
Sbjct: 397 SEGANTMDVGRAVLVQNEPRTRLDA 421


>10_07_0128 +
           13195958-13196011,13196399-13196407,13197257-13197337,
           13197375-13197856,13198287-13198323,13198425-13198529
          Length = 255

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 390 LNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVFVLK 521
           L N  R + D    GT+G    ++I A +W  DY   K V  L+
Sbjct: 62  LQNDIRVKPDLDALGTLGDAGWYSIRAILWAVDYELPKTVIALR 105


>12_01_0413 + 3286897-3286990,3287269-3287432
          Length = 85

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 500 TRCIVSAPHC---CCNSEARSYPHSAKCTSI 417
           T C V  PHC    CN++ ++   S KC S+
Sbjct: 35  TECTVETPHCTMDSCNAKCKAEATSRKCNSL 65


>01_04_0008 +
           15041682-15041909,15042035-15042319,15042406-15042723,
           15044087-15044128,15045111-15045391,15045808-15045883,
           15046196-15046296,15047971-15048088,15048872-15049186
          Length = 587

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -2

Query: 611 PLLFTMIIITGNLYRNMSLX--PCLRSQKQSLLQHKYTFTRCIVSAPHCCCNSEARSYPH 438
           P LF + I+T N+     L   P L          +Y F +   + P+ C  S   +YP 
Sbjct: 370 PYLFLLSIVTENVSVKFGLYQGPHLYEGLNGYFDFQYRFQKFFATEPYACDPSSLPTYPP 429

Query: 437 S 435
           S
Sbjct: 430 S 430


>12_01_0412 +
           3283425-3283518,3284046-3284205,3284532-3284634,
           3286339-3286548
          Length = 188

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = -2

Query: 500 TRCIVSAPHC---CCNSEARSYPHSAKC 426
           T C V  PHC    CN++ ++   S KC
Sbjct: 35  TECTVETPHCTMDSCNAKCKAEASSRKC 62


>04_03_0140 - 11736496-11736702,11737950-11738456
          Length = 237

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +3

Query: 402 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRV 509
           P H  D  T  T GVGPG A A A+  R   PG  V
Sbjct: 52  PLHA-DIDTAKTCGVGPGMAFARAVLPRLDPPGSGV 86


>01_06_1588 + 38474698-38477169
          Length = 823

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 332 FWNALLNCFENSVVVQWYCSAACLSLTNSV-FAFCFCFSPCH 210
           FW + LN F +S+ V   C AACL L N V F +    S C+
Sbjct: 353 FWGSDLNLF-SSISVDG-CKAACLELCNCVAFEYKDDVSDCY 392


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 611 PLLFTMIIITGNLYRNMSLXPCLRSQKQSLLQHKYTFTRCIVSA 480
           PLL  ++++   L    S  PCL  Q  +LLQ K +F+    SA
Sbjct: 12  PLLLVLLLLLQTLIA--SSLPCLPDQAAALLQLKRSFSATTASA 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,583
Number of Sequences: 37544
Number of extensions: 346420
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)