Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0064.Seq
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)          51   7e-07
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   3.1  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)              28   7.2  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)
          Length = 521

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 27/67 (40%), Positives = 39/67 (58%)
 Frame = +3

Query: 285 LNYYTVFKTVQQGIPKDSIIVSEGANTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAI 464
           LN   +   V+Q + KDS+IV++G + +     +L    P   LD G FGT+GVG GFA+
Sbjct: 334 LNPMKLLNIVEQVMSKDSVIVADGGDFVGTAAYILRPRAPLSWLDPGAFGTLGVGGGFAL 393

Query: 465 AAAMWCR 485
            A + CR
Sbjct: 394 GAKL-CR 399


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 149  SVKGLMSECTANSDFLLL*NSCRRYFDLN 63
            S  G   EC +  + LL  N CR+YFDL+
Sbjct: 2372 SGSGFRCECASGYNGLLCQNVCRQYFDLS 2400


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 281  TTELLHCFQNSSTRHSKRFNHCQRRSE 361
            TT +L+CF  S  ++ +  NH  R+ E
Sbjct: 1021 TTRMLYCFSESPAKNLRDINHMLRQGE 1047


>SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 185 ENFLSDNLFTRASVKGLMSECTANSDF 105
           EN  S     + SV+G MS C ANS+F
Sbjct: 23  ENIYSKYKSLKYSVQGCMSSCLANSEF 49


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = -1

Query: 567 EHVSXTMPEKPKAESPSTQIHVYQVHSLGTTLLLQ*RSQVLPP*CQMYQHLACVSDDC 394
           E  S  +PEKP  + P  +     V S+   L  Q R  V+      Y H  CV   C
Sbjct: 280 EAFSCFLPEKPTMQLPKLKCACGYVRSMCVLLCAQCRRVVMCACACRYVHSVCVMCAC 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,842,288
Number of Sequences: 59808
Number of extensions: 411814
Number of successful extensions: 1256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)