Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0064.Seq
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...   124   7e-29
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...   124   7e-29
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    50   1e-06
U97402-2|AAB63409.2|  393|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U97402-1|ABB51193.1|  393|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U97405-8|AAB53011.1|  425|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score =  124 bits (298), Expect = 7e-29
 Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
 Frame = +3

Query: 3   RMNWMLHFGQPPRYAPDVKIIQVEISPARISQQQEIRISSTLRH*TFYRSSCKKVVRKEV 182
           R NW+LHFG PPR+  DVK++Q++I P    Q  +  +           +  +   R   
Sbjct: 341 RFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLG---DIGETLAELTPRLGD 397

Query: 183 LIATSKQQLVAGTETETKSKHRICEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGA 359
                  +         +      E      + PLNYY  ++ +++ +   D I+++EGA
Sbjct: 398 WTYDESTEWFKKLRENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGA 457

Query: 360 NTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVFVLK 521
           NTMDIGR ++ +  P+ RLDAGTFGTMGVG GF++AAA+W RD++P  +V V++
Sbjct: 458 NTMDIGRTMMPSRLPKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQ 511



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 509 ICVEGDSAFGFSGMVXET 562
           + V+GDSAFGFS M  ET
Sbjct: 508 LVVQGDSAFGFSAMELET 525


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score =  124 bits (298), Expect = 7e-29
 Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
 Frame = +3

Query: 3   RMNWMLHFGQPPRYAPDVKIIQVEISPARISQQQEIRISSTLRH*TFYRSSCKKVVRKEV 182
           R NW+LHFG PPR+  DVK++Q++I P    Q  +  +           +  +   R   
Sbjct: 341 RFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLG---DIGETLAELTPRLGD 397

Query: 183 LIATSKQQLVAGTETETKSKHRICEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGA 359
                  +         +      E      + PLNYY  ++ +++ +   D I+++EGA
Sbjct: 398 WTYDESTEWFKKLRENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGA 457

Query: 360 NTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVFVLK 521
           NTMDIGR ++ +  P+ RLDAGTFGTMGVG GF++AAA+W RD++P  +V V++
Sbjct: 458 NTMDIGRTMMPSRLPKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQ 511



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 509 ICVEGDSAFGFSGMVXET 562
           + V+GDSAFGFS M  ET
Sbjct: 508 LVVQGDSAFGFSAMELET 525


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 26/83 (31%), Positives = 46/83 (55%)
 Frame = +3

Query: 222 ETETKSKHRICEAQASSTAVPLNYYTVFKTVQQGIPKDSIIVSEGANTMDIGRGLLLNNH 401
           E E+ +  ++ +   +    PLN+    +T+ Q +P D+I+V++G + +     ++    
Sbjct: 434 EKESANAKKMEQKLTNGFLNPLNF---LRTLDQSLPDDAILVADGGDFVGSAAYIVRPRG 490

Query: 402 PRHRLDAGTFGTMGVGPGFAIAA 470
           P   LD G FGT+GVG GFA+ A
Sbjct: 491 PLQWLDPGAFGTLGVGGGFALGA 513


>U97402-2|AAB63409.2|  393|Caenorhabditis elegans Hypothetical
           protein C30H7.2a protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 49  PTLKLFRSKYLLQEFHNSKKSELAVHSDIRPFTEALVKRLSERKFSLQPQNN 204
           PTLKLFR+    +  + S +S  A+   I    E  VK+  E K +LQ  +N
Sbjct: 94  PTLKLFRNGEAAKREYRSSRSVEALSEFINKQMEVTVKKFIE-KNALQAAHN 144


>U97402-1|ABB51193.1|  393|Caenorhabditis elegans Hypothetical
           protein C30H7.2b protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 49  PTLKLFRSKYLLQEFHNSKKSELAVHSDIRPFTEALVKRLSERKFSLQPQNN 204
           PTLKLFR+    +  + S +S  A+   I    E  VK+  E K +LQ  +N
Sbjct: 94  PTLKLFRNGEAAKREYRSSRSVEALSEFINKQMEVTVKKFIE-KNALQAAHN 144


>U97405-8|AAB53011.1|  425|Caenorhabditis elegans Hypothetical
           protein T09B4.9 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 196 QNNSWWQGLKQKQKANTEFVRLKQAALQYH*TTTLFSKQFNKAFQKIQSL-SAKERIPWI 372
           +++ W+ G K   ++NT + +L    ++Y  +  +  +      +KI S+ S +  +  +
Sbjct: 212 KDSKWYSGWKNFSESNTYYHKLLDWKIKYDESDNMAVRMMRGVTEKIGSVFSGQNEVSEV 271

Query: 373 LAEVY 387
           L E++
Sbjct: 272 LTEIH 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,461
Number of Sequences: 27780
Number of extensions: 314635
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)