Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0064.Seq
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.46 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 452 WLRYCSSNVVPRLCTW*TCICVEGDSAF 535
           WL + + N++  +CT  T  C  G +AF
Sbjct: 632 WLPFFTCNIMDAICTKLTADCQPGVTAF 659



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 295 TLFSKQFNKAFQKIQS 342
           T+F+ +F KAF K+ S
Sbjct: 678 TVFNPEFRKAFHKLVS 693


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 306 KTVQQGIPKDSIIVSEGANTMDIGRGLLLNNH 401
           KTV     KD     EG  +   GRG ++ N+
Sbjct: 7   KTVSYTNKKDESYFDEGGRSYGKGRGFIIQNN 38


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 74 FDLNN-FNVGRISRRLSKVQ 18
          +DL N FN+ R  R+LSK Q
Sbjct: 14 YDLENEFNINRPRRKLSKKQ 33


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 242 FAFCFCFSPCHQLLF*GCNENFLSDNLFTRAS 147
           F FC C  P H L+  G  E F  + LF   S
Sbjct: 576 FDFCGCGWPQHMLIPKGNKEGFAME-LFVMVS 606


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 419 CWYIWHYGGRTWLRYCSSNVV 481
           CW +  YG R +  + + +V+
Sbjct: 828 CWEVMSYGERPYWNWSNQDVI 848


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 399 HPRHRLDAGTFGTMGVGPGFAIAAAM 476
           HPRHRL     G + +  G  +   M
Sbjct: 172 HPRHRLCVFVAGVVFIVSGLLMLVGM 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,635
Number of Sequences: 438
Number of extensions: 4167
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)