Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0063.Seq
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 137 1e-33
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 129 3e-31
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 118 9e-28
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 117 2e-27
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 83 4e-17
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 51 1e-07
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 42 1e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.31
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.73
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 1.7
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 6.8
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 6.8
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 9.0
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 25 9.0
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 9.0
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 9.0
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 25 9.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.0
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 9.0
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 137 bits (331), Expect = 1e-33
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYNGEDKTFFPEEVSSM 427
P +TIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V Y GE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAY 508
VL KM+ETAEAYLG V +AV+TVPAY
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAY 147
Score = 122 bits (295), Expect = 3e-29
Identities = 81/173 (46%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 255 TQYSMPNV------SSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HITVKTKPFSPRK 416
T + + +V S M P V++ + +TK F+P +
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHW-PFKVISKDGKPVLQVEYKG------ETKTFTPEE 116
Query: 417 SVPWCLRK*RKLPK-LISAKLCRMQLSRFPRTQ*LSRQATKDAGTISGLNVLR 572
L K R+ + + K+ ++ RQATKDAG I+GLNVLR
Sbjct: 117 ISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLR 169
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 129 bits (312), Expect = 3e-31
Identities = 58/87 (66%), Positives = 71/87 (81%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYNGEDKTFFPEEVSSM 427
P +TIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V + GE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAY 508
VL KM+E+AEA+LG V +AV+TVPAY
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAY 147
Score = 123 bits (297), Expect = 2e-29
Identities = 80/171 (46%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 255 TQYSMPNVSSDVSSKMLLCKPT*STGLSR--LSVMEANLRSR*HITVK--TKPFSPRKSV 422
T + + P + + V+E + + + K TK F+P +
Sbjct: 64 TIFDAKRLIG-----RRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEIS 118
Query: 423 PWCLRK*RKLPK-LISAKLCRMQLSRFPRTQ*LSRQATKDAGTISGLNVLR 572
L K R+ + + K+ ++ RQATKDAG I+GLNVLR
Sbjct: 119 SMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLR 169
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 118 bits (283), Expect = 9e-28
Identities = 53/87 (60%), Positives = 68/87 (78%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYNGEDKTFFPEEVSSM 427
P++T+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAY 508
VLTKMKE +EA L K V+ AVITVPAY
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAY 151
Score = 106 bits (254), Expect = 3e-24
Identities = 71/172 (41%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 255 TQYSMPNV-----SSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HITVKTKPFSPRKS 419
T + + + K + P + + +E N + K F+ ++
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLG------EKKQFTAQEI 121
Query: 420 VPWCLRK*RKLPKLISAKLCRMQLSRFPR-TQ*LSRQATKDAGTISGLNVLR 572
L K +++ + K + P R ATKDAG I+GLNVLR
Sbjct: 122 SAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLR 173
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 117 bits (281), Expect = 2e-27
Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-NT 257
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 258 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HITVKTKPFSPRKSVPWCLR 437
+ + + + + K S ++ L ++ K K F+P + L
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPL-VEVNVGGKKKKFTPEEISAMILS 156
Query: 438 K*RKLPKLISAKLCRMQLSRFPR-TQ*LSRQATKDAGTISGLNVLR 572
K ++ + K + P RQATKDAGTI+GLNV+R
Sbjct: 157 KMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIR 202
Score = 115 bits (276), Expect = 6e-27
Identities = 50/87 (57%), Positives = 70/87 (80%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYNGEDKTFFPEEVSSM 427
P++TIFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAY 508
+L+KMK+TAEAYLGK V +AV+TVPAY
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAY 180
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 82.6 bits (195), Expect = 4e-17
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYNGEDKTFFPEEVSSM 427
P++T F KRLIGR+F++ VQ D+K P+++V A KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWLEA---RGKTYSPSQIGGF 166
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAY 508
+L+KM+ETA YLGK V+NAV+TVPAY
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAY 193
Score = 81.0 bits (191), Expect = 1e-16
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 8/176 (4%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 245
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 246 NPNTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*H------ITVKTKPFS 407
NP + ++K L+ + + R + E + H + + K +S
Sbjct: 109 NPENTF--------FATKRLIGRRFKEPEVQR-DIKEVPYKIVEHSNGDAWLEARGKTYS 159
Query: 408 PRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPR-TQ*LSRQATKDAGTISGLNVLR 572
P + + L K R+ K + + P RQATK AG I+GLNVLR
Sbjct: 160 PSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +3
Query: 66 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 245
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 246 N 248
N
Sbjct: 63 N 63
Score = 41.9 bits (94), Expect = 7e-05
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +2
Query: 251 QHTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYNGEDKTFFPEEVSSM 427
++T+ KRL GR ++D ++ + ++ G KV Y E+ F ++ +
Sbjct: 65 RNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAA 124
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLQ 523
TK+K AEA L +V + VI++PA+ +Q
Sbjct: 125 YFTKIKAIAEAELIGSVSDVVISIPAWFTDIQ 156
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
Score = 30.3 bits (65), Expect = 0.24
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 389 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAY 508
++K E S L ++ E+AE +LG V V++VP Y
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVY 173
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNT 257
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 258 QYSMPNV 278
+S+ NV
Sbjct: 83 AHSIRNV 89
Score = 29.1 bits (62), Expect = 0.55
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYN-GEDKTFFPEEVS 421
P H+I + K L+ E VQ +P + + + +++ +++ + EE+
Sbjct: 82 PAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEII 141
Query: 422 SMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLQTS 529
+M + AE + + + V+TVP + LQ S
Sbjct: 142 AMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRS 177
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.73
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 73 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 168
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 519 SRQATKDAGTISGLNVLRSSINPLLLRMLTVF 614
S++ TKD ++ NVL+ SI PLLL + F
Sbjct: 311 SQRTTKDLEVLN--NVLKDSIEPLLLPTVNKF 340
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 18 AELF*EQVTRLIKYKMAKAPAVGIDLGTTYSCVGVFQ 128
AE+F EQ+T ++ YK A++ +D ++ + +Q
Sbjct: 191 AEIFGEQITWIVPYKFAQSVPTDVDFRIMHTFLEFYQ 227
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 177 PSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLC 311
P +A T ER++ AAK A+N Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.9
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Frame = -2
Query: 492 ITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSL 346
I++ T+L + S + +S+ + S +LSS + Y++ ++ +L
Sbjct: 618 ISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTL 677
Query: 345 TTSKGQCFMSACTVASSNLRPMRRLASNIVCWGSS 241
+S +S+ VASS+ P+ +S + + +S
Sbjct: 678 VSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 159 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 55
G W SP S + H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 222 AAKNQVAMNPNTQYSMPNVSSDVSSKML 305
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 388 TVICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 266
T I L + S+TDN+ER + +G + I +TS F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 390 KTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRTQ 512
+ K KSVP C + + K IS K+ R+Q + P Q
Sbjct: 16 RPKDIKSIKSVPICEKHRASVVKDISRKISRIQSATLPEYQ 56
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 427 GAYENEGNCRSLSRQNCAECSYHGSRVLND 516
GAY N C +S N A CS S ++ND
Sbjct: 1689 GAYSNA--CVDISLSNLALCSILNSALIND 1716
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 478 AECSYHGSRVLNDSPDKPQKMQVP 549
A + HG +L+ PD+ QK+Q P
Sbjct: 271 ANAAVHGLCLLSQVPDQQQKLQQP 294
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -1
Query: 307 SSIFELTSDETFGIEY-CVL 251
S+++ELT DET +++ C+L
Sbjct: 51 STVYELTGDETLNLKFTCIL 70
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 59 QNGKSTRSRNRSGYHVLLRWCLPARE 136
+NGK T +R +S + W P++E
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE 502
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 246 NPNTQYSMPNVSSDVSSKMLLCKPT*STGLS 338
N NTQ+S+PN S V L +P G +
Sbjct: 327 NLNTQFSLPNNSQPVFGHTSLTQPVNPNGFT 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,310
Number of Sequences: 5004
Number of extensions: 60480
Number of successful extensions: 246
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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